PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2745s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 577aa    MW: 64569.8 Da    PI: 9.2175
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2745s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.5e-06174193525
                             --SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                             lC++f   G C++G+ C+F H
  SapurV1A.2745s0010.1.p 174 LCKDFVV-GRCRRGNHCQFLH 193
                             8******.************* PP
2zf-CCCH17.57.5e-06234252625
                             -SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                             C++f++ G C++G++C+++H
  SapurV1A.2745s0010.1.p 234 CNDFLK-GSCRRGESCRYSH 252
                             ******.************* PP
3zf-CCCH20.58.2e-07297317526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                             +C+ffa+ G C+ G  C+F+H+
  SapurV1A.2745s0010.1.p 297 PCKFFAA-GNCRNGKYCRFSHD 317
                             7**9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.001169195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77169196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5171194IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-6173197IPR000571Zinc finger, CCCH-type
SMARTSM003560.024228254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.591228255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596292319IPR000571Zinc finger, CCCH-type
SMARTSM003560.0019294318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6295317IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4297319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MKKGGAASVK MSGSGRKRSS KWDLKEGSRM SFEDVEDNTW PGKAGISFRD KESRRDWLSP  60
EAAGGTRSKW SAMEPLPGRR SSRRDDNIDE DRGRTSKATY EDDSYGTRMS PGLDEWRQKS  120
FRNSPKNEYK RTRRSRSRSR SRSRSRSRSP VHGFGRESGA YDRSRSISGV SAQLCKDFVV  180
GRCRRGNHCQ FLHQDTETCE DDWERPRKAA ASKYPISHDS KQYPIGSGRS ADCCNDFLKG  240
SCRRGESCRY SHHGASDPSS RGSANEGIRE RDNDRRHRYA SPERRAERET RRAADIPCKF  300
FAAGNCRNGK YCRFSHDDET LASPDKRSRD GRWPPSQNSD DVDKSWNGPK WSESHSSDAA  360
KLSENKNEKL DAPEPRLSVR CMEDGWGLNL VENKTHNNPP TKEVVEIDKK ESLPWKTENA  420
DVSEHRAPEN WIGDMEMSPD WNYRLQPSNH INKGEHASLP SCELQNGSGQ TRDAPAIMPP  480
MLNETSSIQQ GYNLKEVGGS ALPHDDGVTG KTAGSYINIS ANFLATQSFN KNGLSSNASP  540
IPNLNATGQI QEAILTNHPR GGTPIPNLNA VGQIQEA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137147RSRSRSRSRSR
2139147RSRSRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2745s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134930.0AC213493.1 Populus trichocarpa clone POP014-L13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310510.20.0zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBLB9HEQ30.0B9HEQ3_POPTR; Uncharacterized protein
STRINGPOPTR_0007s03970.20.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252