PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.2739s0010.9.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NF-YA | ||||||||
Protein Properties | Length: 203aa MW: 22251 Da PI: 9.9177 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.5 | 4.1e-32 | 62 | 118 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQ+++I++RRq+Rak+e ekk k rkpylheSRh+hA+rR+Rg+gGrF SapurV1A.2739s0010.9.p 62 EEPVYVNAKQFHGIMRRRQARAKAELEKKA-VKVRKPYLHESRHQHAMRRARGCGGRF 118 69***************************9.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.2E-36 | 60 | 121 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.826 | 61 | 121 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.8E-28 | 63 | 118 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.1E-24 | 64 | 86 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 66 | 86 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.1E-24 | 95 | 118 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MGGHLEPNSQ MELVGHSIVL TSHPYTDPQY GGMFTSYGAQ AMVPQLYGMP HARMPLPLEM 60 EEEPVYVNAK QFHGIMRRRQ ARAKAELEKK AVKVRKPYLH ESRHQHAMRR ARGCGGRFLN 120 TKKLDNNATS PTSEKGSGDL NSSGDLEEGK ESMVRGMQTP ASSNGHGLSA RYHSSSHDGS 180 FLGQQKETTH GNRVSNGAVS IH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 6e-21 | 62 | 126 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.2739s0010.9.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ914440 | 0.0 | HQ914440.1 Populus euphratica CCAAT-binding transcription factor subunit B mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464897.1 | 1e-133 | nuclear transcription factor Y subunit A-7 | ||||
Refseq | XP_024464898.1 | 1e-133 | nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A2I4KKY3 | 1e-132 | A0A2I4KKY3_POPTR; NF-YA family protein | ||||
STRING | POPTR_0001s27300.1 | 1e-125 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12840.4 | 3e-26 | nuclear factor Y, subunit A1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.2739s0010.9.p |