PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2546s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 453aa    MW: 49522.6 Da    PI: 9.1569
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2546s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000126080323
                            ETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                            C++C+k F r  nL+ H r H
  SapurV1A.2546s0020.1.p 60 CEICNKGFQRDQNLQLHRRGH 80
                            *******************88 PP
2zf-C2H213.50.00021134156123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC++C+k++  +s+ k H +t+
  SapurV1A.2546s0020.1.p 134 WKCEKCSKRYAVQSDWKAHSKTC 156
                             58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.24E-65780No hitNo description
Gene3DG3DSA:3.30.160.602.0E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8245880IPR007087Zinc finger, C2H2
SMARTSM003550.115880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-4122155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.24E-6129154No hitNo description
SMARTSM00355130134154IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MLETIMAAEE EITSFVQNPV GGSNPPALKK KRNLPGTPDP EAEVVALSPK TLMATNRFLC  60
EICNKGFQRD QNLQLHRRGH NLPWKLKQRT NKEVKKRVYV CPEKSCVHHH PSRALGDLTG  120
IKKHFCRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE YKCDCGTIFS RRDSFITHRA  180
FCDALAEETA RVNAVSSIND LSSGCINYHL TGNPLGPNMA QNFSSIFKPI SRNDNQTRQG  240
GVSLWMNQGL AQESEAMGNN FQEVHQLRSV TSSGAMFGDL PAVSSSQTPP SDNYMLNWPV  300
FGNKILSDGG ASQLASVPSL YSSQEHQSHQ TTSASMSATA LLQKAAQIGA TSSDPSFLGS  360
FAIKSSANKV QDASKFYGLY GSSPVSTNPA SDVESSGNDQ ISTLNHQIQM YSSKRQKIFQ  420
SGQDNPAGGQ TRDFLGVGVQ AICHPSSING WI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-37130199372Zinc finger protein JACKDAW
5b3h_F5e-37130199372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2546s0020.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043608.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9FFH31e-148IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLU5FMI70.0U5FMI7_POPTR; C2H2 family protein
STRINGPOPTR_0017s04840.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-147C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]