PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.2517s0020.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 330aa MW: 36156.7 Da PI: 5.0062 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 57 | 3.4e-18 | 43 | 92 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq SapurV1A.2517s0020.2.p 43 RSKHSETEQRRRSKINERFQALRDLIPQN----DQKRDKASFLLEVIEYIQFLQ 92 899*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.8E-25 | 38 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.84E-20 | 40 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.72 | 41 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.14E-17 | 43 | 96 | No hit | No description |
Pfam | PF00010 | 1.0E-15 | 43 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.5E-14 | 47 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MVKSAKSQLD EEDEPEDYDS SSYKGEVVKA ESKSSEPKAN ANRSKHSETE QRRRSKINER 60 FQALRDLIPQ NDQKRDKASF LLEVIEYIQF LQDKLQMYEG SYEGWSQEPA KLLPWIDRAS 120 AESLLDHTTQ VMKNGSAHEN SVSLANVHNS IESDMGAAAM YKTLDHPPGP TSQAIPFDAQ 180 TPSNVFAAVG RGGLQESVSD AENMAYQLQS QLLHGRPCAT ECSTPNNTLN GQQDLASDSL 240 SVNISNAYSQ RILNTLTQAL HSSGVDLAQT SIGVQIDVGK RENSTTAVAP SSKDQVNQYL 300 SNQVIVQDGV GSGAENSEQA HKRPRREKC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.2517s0020.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010999420.1 | 0.0 | PREDICTED: transcription factor BIM2-like isoform X2 | ||||
TrEMBL | U5GF36 | 0.0 | U5GF36_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s11180.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 6e-54 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.2517s0020.2.p |