PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.2497s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 558aa MW: 61313.9 Da PI: 7.6846 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.00096 | 9 | 31 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+ksF + +L H++tH SapurV1A.2497s0030.1.p 9 HVCKLCKKSFLTGKMLGGHMKTH 31 79********************9 PP | |||||||
2 | zf-C2H2 | 14.8 | 8.5e-05 | 81 | 102 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cgk F ++ +L+ H+r H SapurV1A.2497s0030.1.p 81 TCRVCGKEFGSPKSLHGHMRHH 102 6*******************99 PP | |||||||
3 | zf-C2H2 | 10.8 | 0.0016 | 112 | 132 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg+ F + +L +H r+H SapurV1A.2497s0030.1.p 112 CEECGRGFLSLKSLSNHKRLH 132 ********************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.89E-6 | 5 | 36 | No hit | No description |
SMART | SM00355 | 0.26 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.284 | 9 | 36 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.1E-6 | 9 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.035 | 80 | 102 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.492 | 80 | 107 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.44E-8 | 81 | 132 | No hit | No description |
Pfam | PF13912 | 2.8E-4 | 82 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 110 | 132 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.074 | 110 | 137 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13894 | 0.0015 | 111 | 133 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 112 | 133 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.9E-4 | 112 | 133 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 1.2 | 385 | 407 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.702 | 385 | 412 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.24E-7 | 385 | 407 | No hit | No description |
Pfam | PF13912 | 9.6E-6 | 385 | 409 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 387 | 407 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.24E-7 | 462 | 489 | No hit | No description |
PROSITE profile | PS50157 | 9.078 | 467 | 494 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.62 | 467 | 489 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 6.0E-9 | 467 | 490 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 469 | 489 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 558 aa Download sequence Send to blast |
MKKNQEKEHV CKLCKKSFLT GKMLGGHMKT HGARKSIKEY VKLESSNMGS ECYGLREQPK 60 KSCKFSGLNH DGSVSMQETA TCRVCGKEFG SPKSLHGHMR HHSVKERKGV NCEECGRGFL 120 SLKSLSNHKR LHHKKSGVSS SGPNPVAMAL SGTETVNLVR RKRSSRMRYK ITPTSSFSRS 180 NESVSGFDFE QEVEEAATTL IMMSRAECNG FDSFCQSKRT ERGEGSHGFD GNGLVKPKKT 240 REDYLDSCDM DYQISISGGE GDSGMGYGEA NQVRLEGLAE SFHKDVESKS PQLDGESGVE 300 FCGIEIEKGG HGEMITTNCT EAESSLDLMG GVGLDVACLG FQKSIPSNQA RIDACDAEMG 360 QDARLQMAAT TDSDITESPS KKGDFKCRIC NRNFISYQSL GGHQTFHRKS SIGVKVDSCK 420 KDSQTISSPD NKATGKLVKI EYIQEPVKQE TDGVIVKDCE SKEGKEHKCP ICFKVFLSGQ 480 ALGGHKRAHL PKSREEHNIE VNQEVSDICN AFNIKVPYTV APEGSNEVRC ESWWPGCESW 540 WPANSHNHET LVGLIAN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.2497s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB970797 | 0.0 | AB970797.1 Populus nigra PniZF1 mRNA for zinc-finger protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002324101.3 | 0.0 | uncharacterized protein LOC7467884 | ||||
TrEMBL | A0A0E4B7W4 | 0.0 | A0A0E4B7W4_POPNI; Zinc-finger protein | ||||
STRING | POPTR_0017s12740.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13359 | 20 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67450.1 | 3e-18 | zinc-finger protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.2497s0030.1.p |