PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2444s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 266aa    MW: 28917 Da    PI: 6.9992
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2444s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-1374120354
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             ++h+e+Er+RR+riN+ +++Lr+l+P a      K++Ka+ L +++ ++k+L
  SapurV1A.2444s0040.1.p  74 KNHSEAERKRRARINTHLDTLRSLVPGA-----SKMDKASLLAEVIGHLKEL 120
                             58*************************9.....7***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.48871120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-1174120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-1274123No hitNo description
Gene3DG3DSA:4.10.280.104.5E-1475123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-1475127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-1377126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2606.2E-4159211No hitNo description
CDDcd048739.90E-5159200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEPCSRNSAR VRASACEGMS DVIVVNSGLQ AGTRNGSCSA SSLVLDNERG ELVEATVRME  60
RKGVSAERSI AALKNHSEAE RKRRARINTH LDTLRSLVPG ASKMDKASLL AEVIGHLKEL  120
KSQAAEAGEG LLMPLDIDEV SVEQEDDGLC TAPYLIRASI CCDYKPEILS DLRKALDDLN  180
LIIMRAEIAT LEGRMKNVFV MSSCKEGLSG DSKVHQFLTG SIHKAFRSIL DKFSQEFSLE  240
STLSSKRRRA ALFQPSLSSS SGDLW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2444s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2167661e-139AC216766.1 Populus trichocarpa clone POP029-O12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376342.11e-151transcription factor bHLH30
TrEMBLB9MW371e-150B9MW37_POPTR; Uncharacterized protein
STRINGPOPTR_0013s12190.11e-150(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-31bHLH family protein