PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.2429s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRAS

Protein Properties

Length: 291aa MW: 33442.4 Da PI: 9.1948

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.2429s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	48.2	2e-15	26	137	14	138
GRAS 14 sgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +++ a L+++ +++s gd+mqR++ayf+ +L arl+ + s y+ + ++ts +ee+ a f + + SapurV1A.2429s0010.1.p 26 ENNVGSALDNLKEVLQRVSLIGDSMQRVVAYFADGLVARLLTKKSPPYNMIMKEPTS----EEEFLA---F-----------IEMYR 94 45555677788888899***********************888888777766665....333222...3...........33458 PP GRAS 101 aIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpeg 138 aIlea e++ +++H+iD d+s +QW +L+q+L++++++ SapurV1A.2429s0010.1.p 95 AILEAYEKKeennkSALHVIDVDVSSFFQWSSLIQSLSEKDNS 137 99999998877766789********************9865 PP
2	GRAS	102.2	7.3e-32	149	287	190	332
GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 +l +Lrvk++ ++aVn+++ l +l +s+++++ +Lkl+ sl+P +vv+veqe +++s sFl rfle+l+y++a+fdsl+ lp SapurV1A.2429s0010.1.p 149 KLTNLRVKKNVTVAVNSIFCLNTLK-DSLKISD----TLKLIHSLNPSIVVLVEQEGSRSSRSFLSRFLECLHYFAAMFDSLDDFLP 230 6789*************998886.8888888....********************************************** PP GRAS 277 reseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsek 332 es er +v + l++ei++++ + + r ++e+W+ r+e GF+ ++ls+k SapurV1A.2429s0010.1.p 231 LESLERFSVKKNHLRKEIKSILNYYKYDtNCPRYDKMETWKGRIEGHGFGGMRLSSK 287 ******************9876664889********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	16.197	1	290	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.7E-13	26	137	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-29	149	287	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MRRKSKRLRE DHVFNPLMNS YKDDDENNVG SALDNLKEVL QRVSLIGDSM QRVVAYFADG 60 LVARLLTKKS PPYNMIMKEP TSEEEFLAFI EMYRAILEAY EKKEENNKSA LHVIDVDVSS 120 FFQWSSLIQS LSEKDNSGNL FHGLLRGSKL TNLRVKKNVT VAVNSIFCLN TLKDSLKISD 180 TLKLIHSLNP SIVVLVEQEG SRSSRSFLSR FLECLHYFAA MFDSLDDFLP LESLERFSVK 240 KNHLRKEIKS ILNYYKYDTN CPRYDKMETW KGRIEGHGFG GMRLSSKSLI *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.2429s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC213423	1e-157	AC213423.1 Populus trichocarpa clone POP042-P09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006376315.1	1e-145	scarecrow-like protein 21
TrEMBL	B9MW61	1e-144	B9MW61_POPTR; GRAS family protein
STRING	POPTR_0013s11930.1	1e-144	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6200	29	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	4e-23	SCARECROW-like 1

Link Out ? help Back to Top
Phytozome	SapurV1A.2429s0010.1.p