PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.2355s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 420aa MW: 47808.2 Da PI: 7.1717 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.5e-05 | 166 | 189 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H SapurV1A.2355s0020.1.p 166 YVCGVCGRKCKTNLDLKKHFKQlH 189 9******************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 2.6E-5 | 88 | 156 | IPR029060 | PIN domain-like |
PROSITE profile | PS50157 | 10.679 | 166 | 194 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 168 | 189 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 3.53E-11 | 180 | 320 | No hit | No description |
Gene3D | G3DSA:3.40.50.1010 | 2.6E-5 | 251 | 305 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MTPLCKAIDT TAASLLKPSI LLHQTPLNFC HSLNYTPILN KNNLTLTSKP PPNHLRPITA 60 TADASHPAAT SEIDMVRNRQ GIYTSKQNKV VVLWDLDNKP PRGPPYPAAM ALKTLAQKFG 120 EVIDMCAYAN RHAFIHLPHW VLEERRERKH LDILERKDIV SPSQPYVCGV CGRKCKTNLD 180 LKKHFKQLHE RERQKKVNRM RSLKGKKRQR YKERFVSGNH KYNEEARRLL TPKVGYGLAA 240 ELRRAGVYVK TVEDKPQAAD WALKRQIEHS MSRGVDWLVL VSDDSDFSEI LRKAREGNLG 300 TVVVGDRDRA MGRHADLWVP WIGVENGELT EKDLVPKGRW RSEDLENDGG LFSVTDFDED 360 GDYGGSDLEG FVDGLVMARS GFNGMRISAF SEGEEEDEQD YLLYDSEYEE IEFEDEGFR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.2355s0020.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006374901.1 | 0.0 | uncharacterized protein LOC18104859 | ||||
TrEMBL | U5FNF9 | 0.0 | U5FNF9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s02520.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6441 | 31 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-156 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.2355s0020.1.p |