PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.2334s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 478aa MW: 52613.9 Da PI: 6.6204 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.2 | 7.8e-07 | 244 | 265 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H SapurV1A.2334s0030.1.p 244 FCTICGKGFKRDANLRMHMRGH 265 6*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.29E-5 | 241 | 268 | No hit | No description |
PROSITE profile | PS50157 | 12.03 | 243 | 270 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0026 | 243 | 265 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.7E-6 | 244 | 294 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 245 | 265 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 54 | 292 | 325 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 37 | 330 | 352 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MSSENPSFTD FNLQQRQKQQ QKWEDAMISP PFGGFNQASE SGYLLSNRDY QTKILDHQED 60 GKSTGTLGTN KVQDWDPRAM LSNLSFLEEK IHHLQDLVHL FVGHKGSGLG GQDQLITQQQ 120 QFLITADLTS IIVQLISTTG SLLPSVKHTL SADIPNGQLG GLPFPPMAGM NCSPQPQNGG 180 GSKVSDQSSK MDVAGDCGAG QSHFIEEHET KEEEDADEGE YLPPGSYDIL QLEKEEILAP 240 HSHFCTICGK GFKRDANLRM HMRGHGDEYK TPAALAKPTK ESSSDPVVIK RYSCPFSGCK 300 RNKDHKKFQP LKSILCVKNH YKRTHCDKSY TCSRCHTKKF SVMADLKTHE KHCGKDKWLC 360 SCGTTFSRKD KLFGHIALFQ GHTPAIPVEE TRGLAVSSDK MDGKEASNKV GNINFSFGSP 420 AATGSGAKNV MEVNEDADDP SSYFSPLGFD TCNFGGFHEF PRPPFDDSES SFSFLLS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.2334s0030.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325563.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Swissprot | Q9C8N5 | 0.0 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | B9IQK8 | 0.0 | B9IQK8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s11520.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5340 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 1e-162 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.2334s0030.1.p |