PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2295s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 352aa    MW: 39268.6 Da    PI: 6.4169
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2295s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.55.8e-28129190159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK++ g++fpr+YYrCt++   gC ++k+v+rs+e+ +++e+ Y+g+H+++
  SapurV1A.2295s0010.1.p 129 LDDGYCWRKYGQKVILGAKFPRGYYRCTHRhsqGCLATKQVQRSDENHSIFEVNYQGRHTCS 190
                             59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.332124187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-26126191IPR003657WRKY domain
SuperFamilySSF1182908.76E-25128191IPR003657WRKY domain
SMARTSM007744.0E-39129191IPR003657WRKY domain
PfamPF031061.2E-24130189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MERSLEWEQK ILVSELAQGK ELAKQLGNHL SPSSSSLEAR QSLVEKILSS YEKALSMLNC  60
GAFAADQPKP TTGITKSPHS FINSSSRSEV SDQDCKEELS NDVSRKRKTQ PRWNVQVKAC  120
SGNGLEVPLD DGYCWRKYGQ KVILGAKFPR GYYRCTHRHS QGCLATKQVQ RSDENHSIFE  180
VNYQGRHTCS QASPPPVASP SLNDDFSKRS KYLCQQQREE KPKPSKEIFL HVGLDCNRGS  240
MDDIFPSFSF PCTSSGNEIE ENNIFTESMV ENFPGSCSPA FKSPATSESN YFSVSPSHMN  300
SFGTFYQSVR TRGCGLTNSV THSPTRDLDI SIDDVDFDTT FPFDNLEFLA E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-17129189868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103108SRKRKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2295s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302620.10.0probable WRKY transcription factor 46 isoform X1
TrEMBLB9GQZ60.0B9GQZ6_POPTR; Uncharacterized protein
STRINGPOPTR_0002s17010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-44WRKY DNA-binding protein 30