PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2213s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 448aa    MW: 49216.3 Da    PI: 7.0109
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2213s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH162.2e-053423761554
                             HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             ++ +++  L++l+ +      +K + a++L +A+eYIk L
  SapurV1A.2213s0020.1.p 342 KMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 376
                             6778999999999998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.687327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.13E-10337390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.69E-6337381No hitNo description
Gene3DG3DSA:4.10.280.105.6E-9342384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MADEYTSTNW WDSSSSSRNK FDSTGSSSTA SGLNSLRSFA WPTEMADFKG RSSMETASVS  60
DSSAAFHDSQ KLQQGHDSSA DLHMMGLGLS SQAMDWNQAL FRGDKSESSF RSTLQDNLSS  120
STNYQQENGI GSSQAQWRER VFTGDSSMTE FKQMNRGFSI DQPQFSPHGN SGDSTVSCQG  180
LQSTFPMDSS SIYGTAATML QGLLISDNQA QHCSFENRPM SYGYGANYGI STNEFLPSLP  240
KGSQFFRNSP PKQLSHNQLQ FSNNTPFWNA SASAMNDVRP SCFPLMQPQF ATSNFDEKPK  300
QNISEVRDSN IVVKKSGSET ATKRPRNETP SPLPSLKVRK VKMGDRITAL QQLVSPFGKT  360
DTASVLSEAI EYIKFLHEQV SVLSTPYMKS GAPILHQQGS DKAKDLQGQK QDLRSRGLCL  420
VPVSSTFPVT HETAVDFWTP TFGGTYR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2213s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445192.10.0transcription factor bHLH123 isoform X1
SwissprotQ8GXT33e-86BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A2K2CBQ90.0A0A2K2CBQ9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s43950.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-88bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]