PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2165s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 267aa    MW: 30180.3 Da    PI: 4.7315
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2165s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix507.5e-16100156263
                trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykk 63 
                             W+++evlaL+++r++me+++ +       We+vs+k++e gf+rs+++Ckek+e+ ++++  
  SapurV1A.2165s0010.1.p 100 WSNDEVLALLRIRSSMETWFPEL-----TWEHVSRKLAEVGFKRSAEKCKEKFEEESRYFNS 156
                             ********************987.....9*****************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-1098161No hitNo description
PROSITE profilePS500906.35398151IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MFEGVPEQFH QFMASRTAAS LPPPFPLLQG SSNSANYPSF YPYSTTSSQQ VPVLQPSFLH  60
PLHQGSPASK DGEKQENNLV AMNLDQFERG RSITELVNPW SNDEVLALLR IRSSMETWFP  120
ELTWEHVSRK LAEVGFKRSA EKCKEKFEEE SRYFNSNINY HKNYRTSFGE LEEIYHGDQN  180
PRQEVTAGER NKKIDKPGTE DEEQDKMRQN LEEETRIDQT VGNQTDDQDN NGKLALRVAC  240
EGGGGAAAFM YCVTSPENAG TKPDLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2165s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319635.11e-133trihelix transcription factor GTL2
TrEMBLB9I5E11e-132B9I5E1_POPTR; Uncharacterized protein
STRINGPOPTR_0013s03670.11e-132(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-19Trihelix family protein