PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2164s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 528aa    MW: 57868.9 Da    PI: 8.9691
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2164s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.52.6e-0678100123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             + C++C+k F+r  nL+ H r H
  SapurV1A.2164s0010.1.p  78 FICEICNKGFKRDQNLQLHRRGH 100
                             89*******************88 PP
2zf-C2H213.20.00026154176123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC++C+k++  +s+ k H r +
  SapurV1A.2164s0010.1.p 154 WKCEKCSKRYAVQSDWKAHSRIC 176
                             58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.52E-877100No hitNo description
Gene3DG3DSA:3.30.160.606.3E-677100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121712.0E-578100IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.86678100IPR007087Zinc finger, C2H2
SMARTSM003550.01178100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355100119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-5142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.52E-8149174No hitNo description
SMARTSM00355120154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MLKGLVMDEN ISNLTFASGE VSASSGSRIE TGALHPQHSF DSTNQPPPKK KKSFPGNPDP  60
DAEVIALSPN SLQTTNRFIC EICNKGFKRD QNLQLHRRGH NLPWKLKQRT NKEVKKKVYV  120
CPEVTCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KRYAVQSDWK AHSRICGTRE  180
YRCDCGTLFS RRDSFITHRA FCDALAEESV RAMAVNPILS SQQPGSSASH LINLQAMSVK  240
REQDENQHLL NPRPEYSIPP WLVYPPIGEA GAGPPQIIPT SQLFPENFDQ SFLQHGNPST  300
NPTVLPPFQY SSTATPHMSA TALLQRAAQM GVTMSKPSQS PAAIPRPHQG HMSNQNPGFS  360
STLPATSTAS SGLFFSSREQ MGGEFGHGLV SLENKGSAVT SGIMEHLAAS DAGGGHSLEH  420
DMMSFLSSAS RFDGSSFDSE DFNGMLIPKR DGGNFQGILS KSTESQFRRT DHDVRTSTAG  480
SPRGGGSDGL TRDFLGLKAF PHKDWLDHIN PSTYGQRNQN LPPPWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34150216369Zinc finger protein JACKDAW
5b3h_F3e-34150216369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2164s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371888.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-113IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLU5FFQ40.0U5FFQ4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s05280.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-115indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]