PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2126s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 359aa    MW: 38583 Da    PI: 6.0467
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2126s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.37.7e-29185245259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                             +Dg++WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r ++dp  +e++Y+geH+++
  SapurV1A.2126s0010.1.p 185 EDGFTWRKYGQKEILGSKFPRAYYRCTHQnlyHCPAKKQVQRLDDDPFQFEVVYRGEHTCH 245
                             7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-27181246IPR003657WRKY domain
SuperFamilySSF1182901.28E-25182246IPR003657WRKY domain
SMARTSM007745.9E-38184246IPR003657WRKY domain
PROSITE profilePS5081120.243185247IPR003657WRKY domain
PfamPF031063.6E-26185245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDDTVSLILH GCKLAEDLAL NLANLANQPE NLSKSCEEII RVFAGAKERL SFHQLSTTSY  60
PHPMLFREPQ DLQHQQNIDP ILQEWLGSSC TSAMETLLHQ TPGVMAERSA LGLIESKVGG  120
MLQMGSGGLF IESSSRSDAQ AMDPSDSGRG SSSSSKRPRK RNDDAGKRTV RVPAQLFGNT  180
EIPPEDGFTW RKYGQKEILG SKFPRAYYRC THQNLYHCPA KKQVQRLDDD PFQFEVVYRG  240
EHTCHMSDTA PSFPRPATGI AQEMAQAMIG QPPPSAATSL GRWVDFSLGP GGSAGSSSSS  300
MAAGSSGGAA GPSTGGRYGK EADYPIAELA DAMFNSGSSS TNSMELIFPG DQPSDKNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-21185244968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2126s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001383.10.0PREDICTED: WRKY transcription factor 55
TrEMBLG8GB851e-178G8GB85_9ROSI; WRKY transcription factor
STRINGPOPTR_0019s08730.11e-165(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-44WRKY DNA-binding protein 55