PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2123s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 269aa    MW: 30118.9 Da    PI: 7.8985
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2123s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.7e-08168208954
                             HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  SapurV1A.2123s0040.1.p 168 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 208
                             699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-14160219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-14163217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-6169208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-6182213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEFELLKSAT EDQMELMMMM MMDKFPEFYG ACSGVADNLS PTEFLAAGVS DSSTPHFNTN  60
NPHSANSPPS MNLPSSLSFN SNNNPIQDQF PRDFLSNPSS SRWRGPDELP DTANDYATPS  120
QKKSSMEAMR EMIYRIAAMQ PIHIDPESVK APKRKNVKIS KDPQSVAARH RRERISERIR  180
ILQRLVPGGT KMDTASMLDE AIHYVKFLKT QVQSLERAEA NRPTTATGIG FPVAMTSGSY  240
LPIGKEYHQQ PAHRRHHHNQ SVQHYGDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2123s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374919.11e-145transcription factor HEC2
TrEMBLB9MVS41e-144B9MVS4_POPTR; Uncharacterized protein
STRINGPOPTR_0014s02720.11e-144(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.16e-40bHLH family protein