PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2089s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 268aa    MW: 30225.1 Da    PI: 8.6059
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2089s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.51e-12371181098
                             HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                      B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                               ++  l++p+ f++++g++   s   +++ +sg  W++ l  +k ++ +++ +GW++Fv+ + +  g  ++F + g  +f   v +
  SapurV1A.2089s0030.1.p  37 LDER-KLRIPNMFVRRYGEE--LSGAAKVTVPSGHAWQIGL--TKDQSNIWFDEGWQKFVEHHSISYGYLLLFAYRGCCNF--SVLI 116
                             4444.59**********954..7889***************..999999*************************9774555..8888 PP

                             E- CS
                      B3  97 fr 98 
                             f+
  SapurV1A.2089s0030.1.p 117 FD 118
                             76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-2022122IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-1924127IPR015300DNA-binding pseudobarrel domain
CDDcd100172.12E-1527118No hitNo description
PROSITE profilePS5086311.88527120IPR003340B3 DNA binding domain
SMARTSM010194.1E-928120IPR003340B3 DNA binding domain
PfamPF023623.3E-1039118IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAFKGKANPN GGCNGLFDSS DERPLVHFFK IILPCILDER KLRIPNMFVR RYGEELSGAA  60
KVTVPSGHAW QIGLTKDQSN IWFDEGWQKF VEHHSISYGY LLLFAYRGCC NFSVLIFDMS  120
ACEIPYPCVG STSAKNTNYG EKHFFNHVEN MEDEDSIEIS GCKTASPDSC VFKSRDLNGF  180
GSEGKSSKRH NASAEQNLGM KRRRGCNSVQ KSQDLKQCGD KKSEGKCLLI NDLENGRESR  240
NYRRMYRTRQ SSLNESNNKG KTDRLLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2089s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9N4T41e-102B9N4T4_POPTR; Uncharacterized protein
STRINGPOPTR_0004s15420.11e-104(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-34B3 family protein