PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.2089s0020.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 398aa MW: 45001.4 Da PI: 8.8387 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.3 | 5.7e-13 | 25 | 109 | 6 | 96 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 + ++ l+ + l +pkkf++++g + s tl+ + g + v+l +k g+ ++ kGW eFv+ +++g f+vF ++g+s+f SapurV1A.2089s0020.2.p 25 MVASILQDKKLKIPKKFVNKYGDE--LSSIATLTAPCGGIFLVEL--QKVNGKLWFHKGWHEFVECYSIRVGYFLVFLYEGKSNF-- 105 4455566677***********865..7779***************..999999***************************99999.. PP EEEE CS B3 93 vvkv 96 +v++ SapurV1A.2089s0020.2.p 106 NVHM 109 6665 PP | |||||||
2 | B3 | 61.6 | 1.3e-19 | 291 | 384 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+ +l ps+v + +l +p +fa+++ + + ++ +tle +g++W v++ + k+g+ l++GW eFv +n+L+egD+++F+l++ SapurV1A.2089s0020.2.p 291 FQVILRPSYVYRGFLLHIPSSFARTFlNRV-TG--FVTLEVCDGKQWPVRC--SFKDGKAKLGQGWTEFVWENNLEEGDVCIFELIH 372 88999******************9995444.34..59999***********..66666677*************************9 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +e ++v +fr SapurV1A.2089s0020.2.p 373 AKEIVMKVAIFR 384 999989999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-20 | 16 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.61E-20 | 17 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.17E-15 | 20 | 111 | No hit | No description |
PROSITE profile | PS50863 | 11.096 | 20 | 113 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-9 | 21 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-9 | 24 | 110 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-26 | 283 | 384 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-26 | 286 | 389 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.51E-24 | 289 | 384 | No hit | No description |
SMART | SM01019 | 3.8E-18 | 291 | 386 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-18 | 291 | 384 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.833 | 291 | 386 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MSQSAGKPDG SDSTARKSCM FYKLMVASIL QDKKLKIPKK FVNKYGDELS SIATLTAPCG 60 GIFLVELQKV NGKLWFHKGW HEFVECYSIR VGYFLVFLYE GKSNFNVHMY DLTVSEIKNP 120 CNSISQLQES SHDNPCLLPH EKDDGLKKIL GFRPPSLNLL SSLTSKNFNE YVHCNCTQST 180 YTAGLEKPHG RTDAFNLREK CQSSRDIGTQ FNGEELTSTE DGVGSIISGT TAKTRGSKRM 240 SENSIQTVKQ KSTRVKNTFE TLTRRQRAVT PEEKERTIRA AHMFRPDNPF FQVILRPSYV 300 YRGFLLHIPS SFARTFLNRV TGFVTLEVCD GKQWPVRCSF KDGKAKLGQG WTEFVWENNL 360 EEGDVCIFEL IHAKEIVMKV AIFRVLEDAV PPDQLSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-46 | 259 | 387 | 17 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-46 | 259 | 387 | 17 | 144 | B3 domain-containing transcription factor VRN1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.2089s0020.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024454808.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X3 | ||||
TrEMBL | A0A2K2AUS2 | 0.0 | A0A2K2AUS2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s15410.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-81 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.2089s0020.2.p |