PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.2089s0010.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 238aa MW: 27455.3 Da PI: 9.0019 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.5 | 4.1e-12 | 5 | 96 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ff++l+ +++ + +rl++p +f++++g++ ++l + g + ++ l k ++++++ +GW++Fv+ + g f++F+++g+ SapurV1A.2089s0010.3.p 5 FFQKLILPSTIRDKRLRIPDSFVKKFGQD--LLGFVRLIVPGGHVSRIGL--IKADEKIWFHDGWQQFVERFTIHIGYFLIFRYEGNAI 89 889999999999**************877..4447***************..9*******************************99888 PP E..EEEEE- CS B3 90 felvvkvfr 98 f +v++f+ SapurV1A.2089s0010.3.p 90 F--NVHIFN 96 8..888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-19 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.9E-20 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.33E-15 | 4 | 96 | No hit | No description |
Pfam | PF02362 | 3.2E-9 | 5 | 96 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.419 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-12 | 6 | 98 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MPRPFFQKLI LPSTIRDKRL RIPDSFVKKF GQDLLGFVRL IVPGGHVSRI GLIKADEKIW 60 FHDGWQQFVE RFTIHIGYFL IFRYEGNAIF NVHIFNLPTS EINYHSNSLC GKRYVAFEEL 120 EDDDRAGIPT TQLIVNKSYN PPALHNLFSG SKLNNGINWG GEENMRLTKS ANVSQVADEW 180 AQNVFAQYNE HKNSQDEVKL YSPDEETPKL KKRGRKRLKI DPSEFFNSDS LLILLCH* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.2089s0010.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011005670.1 | 1e-144 | PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1 | ||||
Swissprot | Q8L3W1 | 7e-52 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A2K2AUR8 | 1e-142 | A0A2K2AUR8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s15400.1 | 1e-143 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-54 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.2089s0010.3.p |
Publications ? help Back to Top | |||
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