PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2089s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 373aa    MW: 42968.9 Da    PI: 9.1617
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2089s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.31e-11596198
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                      B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                            ff++l+ +++ + +rl++p +f++++g++      ++l  + g + ++ l   k ++++++ +GW++Fv+   +  g f++F+++g+  
  SapurV1A.2089s0010.1.p  5 FFQKLILPSTIRDKRLRIPDSFVKKFGQD--LLGFVRLIVPGGHVSRIGL--IKADEKIWFHDGWQQFVERFTIHIGYFLIFRYEGNAI 89
                            889999999999**************877..4447***************..9*******************************99888 PP

                            E..EEEEE- CS
                      B3 90 felvvkvfr 98
                            f  +v++f+
  SapurV1A.2089s0010.1.p 90 F--NVHIFN 96
                            8..888875 PP
2B361.21.7e-19277367498
                             E-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                      B3   4 vltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                             vl ps+  + ++++lp  fae++  g     s  ++l+ ++g++W v++ yr+++    +++GW eF ++n+L egD+++F+l +++
  SapurV1A.2089s0010.1.p 277 VLRPSYLYRGCIMYLPSGFAEKNlnG----LSGFMKLQLPDGKQWPVRCLYRGGR--AKFSQGWYEFTQENNLGEGDVCIFELLKSR 357
                             78899******************643....34469999***********666665..5699*********************99988 PP

                             EE..EEEEE- CS
                      B3  89 efelvvkvfr 98 
                             +  l+v+vfr
  SapurV1A.2089s0010.1.p 358 DVVLKVTVFR 367
                             8889999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-19396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-19396IPR015300DNA-binding pseudobarrel domain
CDDcd100177.96E-15496No hitNo description
PROSITE profilePS5086310.419598IPR003340B3 DNA binding domain
PfamPF023628.0E-9596IPR003340B3 DNA binding domain
SMARTSM010192.4E-12698IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-25266367IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-25268367IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-23272367No hitNo description
SMARTSM010195.5E-22274369IPR003340B3 DNA binding domain
PROSITE profilePS5086314.043274369IPR003340B3 DNA binding domain
PfamPF023621.4E-17277367IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MPRPFFQKLI LPSTIRDKRL RIPDSFVKKF GQDLLGFVRL IVPGGHVSRI GLIKADEKIW  60
FHDGWQQFVE RFTIHIGYFL IFRYEGNAIF NVHIFNLPTS EINYHSNSLC GKRYVAFEEL  120
EDDDRAGIPT TQLIVNKSYN PPALHNLFSG SKLNNGINWG GEENMRLTKS ANVSQVADEW  180
AQNVFAQYNE HKNSQDEVKL YSPDEETPKL KKRGRKRLKI DPNEQQLSSL NEDDGEARFR  240
FYESASARKR TVTAEERERA MNAAKAYAPD NPYCRVVLRP SYLYRGCIMY LPSGFAEKNL  300
NGLSGFMKLQ LPDGKQWPVR CLYRGGRAKF SQGWYEFTQE NNLGEGDVCI FELLKSRDVV  360
LKVTVFRVLE DV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A7e-7324037215146B3 domain-containing transcription factor VRN1
4i1k_B7e-7324037215146B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2089s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005670.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1
SwissprotQ8L3W11e-138VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A2K2AUR80.0A0A2K2AUR8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s15400.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-134B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]