PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2087s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LSD
Protein Properties Length: 134aa    MW: 14226.5 Da    PI: 8.4964
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2087s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.94e-14832125
                 zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                            C gCr lL+YP GA+sVRC++C++V
  SapurV1A.2087s0010.1.p  8 CRGCRSLLMYPHGATSVRCSCCHAV 32
                            9***********************9 PP

2zf-LSD140.44.8e-134670125
                 zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                            Cg+C t+L+YP G+psV+C++C+ V
  SapurV1A.2087s0010.1.p 46 CGNCWTTLMYPNGSPSVKCPVCQYV 70
                            ***********************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.6E-15534IPR005735Zinc finger, LSD1-type
PfamPF069439.2E-12832IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.5E-104373IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-124670IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MDMAQLICRG CRSLLMYPHG ATSVRCSCCH AVNLAPGYNH LAHVNCGNCW TTLMYPNGSP  60
SVKCPVCQYV TNVSMANMRV PLPANRPNGT SGTPPSTSMT QTVVVENPMS VDESGKLVSN  120
VVVGVTTDKK IPR*
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.2087s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826844e-40AC182684.2 Populus trichocarpa clone Pop1-37C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024462592.19e-81protein LOL2 isoform X3
SwissprotP940772e-52LSD1_ARATH; Protein LSD1
TrEMBLA0A2K2CD302e-79A0A2K2CD30_POPTR; Uncharacterized protein
STRINGPOPTR_0001s43300.11e-77(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40273361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-52LSD family protein
Publications ? help Back to Top
  1. Spedaletti V, et al.
    Characterization of a lysine-specific histone demethylase from Arabidopsis thaliana.
    Biochemistry, 2008. 47(17): p. 4936-47
    [PMID:18393445]
  2. Szechyńska-Hebda M,Czarnocka W,Hebda M,Bernacki MJ,Karpiński S
    PAD4, LSD1 and EDS1 regulate drought tolerance, plant biomass production, and cell wall properties.
    Plant Cell Rep., 2016. 35(3): p. 527-39
    [PMID:26754794]
  3. Czarnocka W, et al.
    The dual role of LESION SIMULATING DISEASE 1 as a condition-dependent scaffold protein and transcription regulator.
    Plant Cell Environ., 2017. 40(11): p. 2644-2662
    [PMID:28555890]
  4. Bernacki MJ, et al.
    LSD1-, EDS1- and PAD4-dependent conditional correlation among salicylic acid, hydrogen peroxide, water use efficiency and seed yield in Arabidopsis thaliana.
    Physiol Plant, 2019. 165(2): p. 369-382
    [PMID:30461017]