PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.2021s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 306aa MW: 34789.1 Da PI: 5.4599 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.3 | 3.8e-50 | 13 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lp+GfrFhPtd+elv++yL kk+ g+++++ +i+e+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg SapurV1A.2021s0010.1.p 13 LPAGFRFHPTDDELVNHYLLKKCGGQSISA-PIIAEIDLYKYDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATG 98 799*************************99.88***************7666789******************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++ + g+kk Lvfy g+apkg kt+W+mheyrl SapurV1A.2021s0010.1.p 99 ADKPIGR--PGPLGIKKALVFYAGKAPKGIKTNWIMHEYRL 137 *****98..668***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-61 | 7 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.684 | 13 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-26 | 14 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MKGNIRSADQ LELPAGFRFH PTDDELVNHY LLKKCGGQSI SAPIIAEIDL YKYDPWQLPE 60 MALYGEKEWY FFSPRDRKYP NGSRPNRAAG TGYWKATGAD KPIGRPGPLG IKKALVFYAG 120 KAPKGIKTNW IMHEYRLANV DRSAGKKNNL RLDDWVLCRI YNKKGSVEKH FPSERKSTAS 180 YPEMEDRKPD INEISGYQNG MSQVAAAAMV MSDASEFLQM DTSDSIPRLN TDSSSSEHVL 240 SPEVTCDKEV QSQQKWNEQL DNAFDFNFDY ADDGFQDDPF ASQIQFQMDQ LSPLQDMFMY 300 LQKPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-80 | 10 | 169 | 12 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.2021s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU223784 | 0.0 | CU223784.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002309945.1 | 0.0 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-121 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | B9HF58 | 0.0 | B9HF58_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s04780.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-116 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.2021s0010.1.p |