PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.2002s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24915.5 Da PI: 9.4116 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.8 | 6.8e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fs+t+kl+ey+s SapurV1A.2002s0050.1.p 9 KKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTNKLHEYIS 59 68***********************************************86 PP | |||||||
2 | K-box | 88.9 | 9.9e-30 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 yqk+ g++l++a++e++q++l+kLk+ +++L++e+R+++GedL++Ls+ +L Leq++ ++l+ +R +K++++++q+++ +kk ++l SapurV1A.2002s0050.1.p 71 YQKALGTDLWSAQYEKMQEQLRKLKDINHKLKKEIRQRIGEDLNELSIDHLCVLEQDMSEALNGVRGRKYHVIKTQTDTCKKKVRSL 157 789999********************************************************************************* PP K-box 88 qeenkaLrkkle 99 +e++ +Lr+++e SapurV1A.2002s0050.1.p 158 EERHGNLRMEYE 169 ********9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.226 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.14E-37 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.46E-40 | 2 | 80 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.1E-20 | 82 | 167 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.005 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MGRGKIEIKK IENPTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSN TNKLHEYISP 60 STTTKKIYDQ YQKALGTDLW SAQYEKMQEQ LRKLKDINHK LKKEIRQRIG EDLNELSIDH 120 LCVLEQDMSE ALNGVRGRKY HVIKTQTDTC KKKVRSLEER HGNLRMEYEA RLEDPYGLVD 180 NEGDYESAAA LVNGVSNLYI CIPPAPRAAP PPAPPPAS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-16 | 1 | 60 | 1 | 60 | MEF2C |
5f28_B | 1e-16 | 1 | 60 | 1 | 60 | MEF2C |
5f28_C | 1e-16 | 1 | 60 | 1 | 60 | MEF2C |
5f28_D | 1e-16 | 1 | 60 | 1 | 60 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.2002s0050.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY359606 | 5e-75 | AY359606.1 Populus tomentosa sex female APETALA3 (AP3) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024456101.1 | 1e-132 | floral homeotic protein PMADS 1 | ||||
Swissprot | Q003J2 | 1e-107 | TM6_VITVI; Agamous-like MADS-box protein TM6 | ||||
TrEMBL | A0A2K2AFH7 | 1e-130 | A0A2K2AFH7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s12000.1 | 1e-111 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2735 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54340.1 | 1e-72 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.2002s0050.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|