PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1984s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 461aa    MW: 49898.7 Da    PI: 7.373
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1984s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.81.8e-31250305156
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                             k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  SapurV1A.1984s0010.1.p 250 KARRCWSPDLHRRFVNALHLLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 305
                             68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.485247307IPR017930Myb domain
SuperFamilySSF466891.25E-16247308IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-28248308IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-26250305IPR006447Myb domain, plants
PfamPF002495.1E-7252303IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MSSSPSQVSQ LGRMPHSYSM LLRSFADQND QTPKLEEFIS RLEEERIKID AFKRELPLCM  60
QLLTSAVETS RKQLQACRGN EGPIPVLEEF IPLKTSTSET PEMTANISDK ASWMTTAQLW  120
SQDSIGTKPQ TTLSSPKQTD IGFNVSSKLV LDTKQRNGGA FLPFSKERNM FPGPTLALAA  180
CTDEQLGLDH KKFPETENGF SCPNRESCGN KMAVIEQGKG GGNSSSSDGQ ETNAATIASA  240
NTSTSQTHRK ARRCWSPDLH RRFVNALHLL GGSQVATPKQ IRELMKVDGL TNDEVKSHLQ  300
KYRLHTRRPS PSPQAAGAPA PHLVVLGGIW VPPEYATAAS AAHSGGATLY GAHPASHAPP  360
PLFCAPPPAS QDFFTAVAAP PPPLHDQTLR HQLQLFKPTS QVPSSPESDF KGSRDRSESI  420
EDGKSESSSW KGESGENDGG ERKGRAALRE EGEESNGSKF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-14250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-14250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-14250303154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-14250303154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-14250303154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-14250303154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-14250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-14250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-14250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-14250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-14250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-14250303255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1984s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308314.10.0myb family transcription factor EFM
SwissprotQ9ZQ851e-115EFM_ARATH; Myb family transcription factor EFM
TrEMBLB9H9930.0B9H993_POPTR; Uncharacterized protein
STRINGPOPTR_0006s16000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.14e-93G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]