PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1908s0010.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 480aa    MW: 52414.8 Da    PI: 9.3031
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1908s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.45.3e-32196252360
                             -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                    WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                             DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geH h+k
  SapurV1A.1908s0010.2.p 196 DGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSF-DGQIAEIVYKGEHSHSK 252
                             9***************************************.***************85 PP
2WRKY104.84.7e-33397454259
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              Dg++WrKYGqK vkg+++prsYYrCts +C+v+k+ver+++dpk++++tYeg+Hnh+
  SapurV1A.1908s0010.2.p 397 GDGFRWRKYGQKIVKGNPYPRSYYRCTSLKCNVRKHVERASDDPKAFITTYEGKHNHD 454
                             6********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-29183253IPR003657WRKY domain
SuperFamilySSF1182902.48E-25193253IPR003657WRKY domain
SMARTSM007741.4E-35194252IPR003657WRKY domain
PROSITE profilePS5081123.043196253IPR003657WRKY domain
PfamPF031061.0E-24196250IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-34381456IPR003657WRKY domain
SuperFamilySSF1182901.31E-28390456IPR003657WRKY domain
PROSITE profilePS5081135.232391456IPR003657WRKY domain
SMARTSM007741.2E-38396455IPR003657WRKY domain
PfamPF031062.3E-26398454IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MEIKESERVV IAKPVASRPS CSTFISFSEL LAGAINASPS NDCSETAVAA IRPKTVRFRP  60
MVNRAPGALV SSQAELSGTA LSNSSNRVSS TDSKTTVIYK PQAKFVSKAT VSLLANMGNF  120
NTISQQTQQS VEARPHRPKQ NKQNFSSQLS SNLPQNIPSH AVAYQTTEPL RSTSHNQDED  180
PKTLSHASNG DRPSYDGYNW RKYGQKQVKG SEYPRSYYKC TYPNCPVKKK VERSFDGQIA  240
EIVYKGEHSH SKPQPAKRNS SGTQGLGAVS DSNAQDRNTT PLWSNQLIER NEGSEGREEN  300
QNEIGLQVHS IYQGKPPPSR DPAGTGSINA GAGTSENSCG LNGECDDGSK GLEGDDDEPR  360
NKRRKTEILS NDGGISGKGV QEPHVVVQSS TDSEIVGDGF RWRKYGQKIV KGNPYPRSYY  420
RCTSLKCNVR KHVERASDDP KAFITTYEGK HNHDMPLKST NIAAAFEPDS QAPSSRDKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-33196456877Probable WRKY transcription factor 4
2lex_A8e-33196456877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1908s0010.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1796081e-159EF179608.1 (Populus tomentosa x P. bolleana) x P. tomentosa clone 01 WRKY transcription factor pseudogene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443283.10.0WRKY transcription factor 44
RefseqXP_024443284.10.0WRKY transcription factor 44
TrEMBLA0A2K1XCR60.0A0A2K1XCR6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s13550.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-112WRKY family protein