PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1895s0020.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

TCP

Protein Properties

Length: 405aa MW: 46040.6 Da PI: 7.9622

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1895s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.5	1.2e-38	129	285	3	135
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasece 74 kkdrhski T++g+RdRR+Rls+++a+ fFdLqd+L fdk+skt+eWLl+qa ++ik++ g s+ss sece SapurV1A.1895s0020.1.p 129 SKKDRHSKINTAQGPRDRRMRLSLKVARDFFDLQDKLRFDKASKTVEWLLTQARTEIKKISGGfpvmnyscsttvgakSASSTSECE 215 69***********************************************************999999999999877666667774 PP TCP 75 aesssssasnsssg...........kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 s+ + +s+ + + k+++ + ++s+k a + +ake r+kar+rarert++k r +++ SapurV1A.1895s0020.1.p 216 VLSEINIDSTLKVSrvskgksslcvKKERRTSRASSSRK--APLNPFAKEAREKARERARERTKQKLRSRSR 285 444444444333335555566665544444443333333..34489999***************998865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.9E-41	129	281	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.383	130	188	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	10.464	262	279	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MFPLSSNGYD PISYNDHQAY NMPFFSDIIS NSKQYVPPPI SFCHLPSPFF AYDQPELEDH 60 SILLQQSYDL LLHQQPLRAT ATSCTAPSQS TVGNNMVDSS KNDVIDEITE ICNKQSHSST 120 EQVPRKRSSK KDRHSKINTA QGPRDRRMRL SLKVARDFFD LQDKLRFDKA SKTVEWLLTQ 180 ARTEIKKISG GFPVMNYSCS TTVGAKSASS TSECEVLSEI NIDSTLKVSR VSKGKSSLCV 240 KKERRTSRAS SSRKAPLNPF AKEAREKARE RARERTKQKL RSRSRRLDES KPCELEAVNQ 300 ELNQFAGCWS PFETGDQESG THNINPSLEV QLVEAEVPFY QEKEQLDARE GMIDETLVSI 360 GKWSPSFPNH LHKYGIPQEN QFTDFQYPLY KTWDHEAYNI DGMC*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MFPLSSNGYD PISYNDHQAY NMPFFSDIIS NSKQYVPPPI SFCHLPSPFF AYDQPELEDH  60
SILLQQSYDL LLHQQPLRAT ATSCTAPSQS TVGNNMVDSS KNDVIDEITE ICNKQSHSST  120
EQVPRKRSSK KDRHSKINTA QGPRDRRMRL SLKVARDFFD LQDKLRFDKA SKTVEWLLTQ  180
ARTEIKKISG GFPVMNYSCS TTVGAKSASS TSECEVLSEI NIDSTLKVSR VSKGKSSLCV  240
KKERRTSRAS SSRKAPLNPF AKEAREKARE RARERTKQKL RSRSRRLDES KPCELEAVNQ  300
ELNQFAGCWS PFETGDQESG THNINPSLEV QLVEAEVPFY QEKEQLDARE GMIDETLVSI  360
GKWSPSFPNH LHKYGIPQEN QFTDFQYPLY KTWDHEAYNI DGMC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1895s0020.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002322035.2	0.0	transcription factor TCP12
Refseq	XP_024442245.1	0.0	transcription factor TCP12
TrEMBL	B9IDZ9	0.0	B9IDZ9_POPTR; Uncharacterized protein
STRING	POPTR_0015s03140.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6564	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	3e-22	TCP domain protein 12

Link Out ? help Back to Top
Phytozome	SapurV1A.1895s0020.1.p