PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.1895s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 405aa MW: 46042.5 Da PI: 7.7464 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.5 | 2.8e-39 | 129 | 285 | 3 | 135 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasece 74 kkdrhski T++g+RdRR+Rls+++a+ fFdLqd+L fdk+skt+eWLl+qa ++ik++ g s+ss sece SapurV1A.1895s0010.1.p 129 SKKDRHSKINTAQGPRDRRMRLSLKVARDFFDLQDKLRFDKASKTVEWLLTQARTEIKKISGGfpvmnyscsttvgakSASSTSECE 215 69*************************************************************999999999999877666667774 PP TCP 75 aesssssasnsssg...........kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 s+ + +s+ + + k+++ + ++s+k a + +akesr+kar+rarert++k r +++ SapurV1A.1895s0010.1.p 216 VLSEINIDSTLKVSrvskgksslcvKKERRTSRASSSRK--APLNPFAKESREKARERARERTKQKLRSRSR 285 444444444333335555566665544444443333333..34489999*****************998865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-41 | 129 | 281 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.383 | 130 | 188 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.294 | 262 | 279 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 405 aa Download sequence Send to blast |
MFPLSSNGYD PISYNDHQAY NMPFFSDIIS NSKQYVPPPI SFCHLPSPFF AYDQPELEDH 60 SILLQQSYDL LLHQQPLRAT ATSCTAPSQS TVGNNMVDSS KNDVIDEITE ICNKQSHSST 120 EQVPRKRSSK KDRHSKINTA QGPRDRRMRL SLKVARDFFD LQDKLRFDKA SKTVEWLLTQ 180 ARTEIKKISG GFPVMNYSCS TTVGAKSASS TSECEVLSEI NIDSTLKVSR VSKGKSSLCV 240 KKERRTSRAS SSRKAPLNPF AKESREKARE RARERTKQKL RSRSRRLDES KPCELEAVNQ 300 EFNQFAGCWS PFETGDQESG THNINPSLEV QLVEAEVPFY QEKEQLDARE GMIDETLVSI 360 GKWSPSFPNH LHKDGIPQEN QFTDFQYPLY KTWDHEAYNI DGMC* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.1895s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322035.2 | 0.0 | transcription factor TCP12 | ||||
Refseq | XP_024442245.1 | 0.0 | transcription factor TCP12 | ||||
TrEMBL | B9IDZ9 | 0.0 | B9IDZ9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s03140.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6564 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68800.1 | 3e-22 | TCP domain protein 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.1895s0010.1.p |