PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1853s0040.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family TCP
Protein Properties Length: 349aa    MW: 37404.1 Da    PI: 10.4076
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1853s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.92.5e-36821852104
                     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 
                             ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++e G+++d++ti WLl+ a+pai+++tgt++ +a ++  +++ +  + ++ss
  SapurV1A.1853s0040.1.p  82 PPKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTREFGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsVNGTLKIPTTTNSS 168
                             6899************************************************************99999666433333333333333 PP

                     TCP  88 gkaaksaakskksqksa 104
                             g+ ++ +ak+k+++  +
  SapurV1A.1853s0040.1.p 169 GEPEEPSAKKKRKRPAN 185
                             33333332222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.3E-3087177IPR005333Transcription factor, TCP
PROSITE profilePS5136926.33588142IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGPTIYHHLL CSTLFGDWQP LISRIDSGEL PNIRVGPTNK KSCNIMSAAP KEEPCTEERP  60
PTPPLAVMPF AAIPMPLTTV TPPKRASTKD RHTKVEGRGR RIRMPATCAA RIFQLTREFG  120
HKSDGETIRW LLEHAEPAII AATGTGTVPA IAMSVNGTLK IPTTTNSSGE PEEPSAKKKR  180
KRPANSEYVD VNDSVSISAS FAPITTRPPQ PQAPQTVAAV PQGLVPMWAI PSNTVVPGAF  240
FMVPTMPGPS NKPQIFTFPA AATPLINISP RPISSFVSSM QSNIAVALPV SGSKPGKGIS  300
MMAPSSSSAH TIRTASTTTN STPQMLRDFS LEIYDKQELQ FMSRSSKQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00635PBMTransfer from PK14653.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1853s0040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441268.10.0transcription factor TCP9
SwissprotO646478e-97TCP9_ARATH; Transcription factor TCP9
TrEMBLB9IC900.0B9IC90_POPTR; Uncharacterized protein
STRINGPOPTR_0014s07450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-87TCP family protein