PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1849s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 118aa MW: 13369.5 Da PI: 6.7719 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.6 | 1.4e-10 | 33 | 86 | 31 | 83 |
.--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 31 eesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83 s+ + d sg++W + +++ r+ s +++l+ GW eFv++ +L++ D+v++ SapurV1A.1849s0030.1.p 33 GYSMNMHAHDGSGQQWIFSCNIqRNESVGHFLSVGWIEFVRERNLQVDDSVTIL 86 4567788999**********775777777**********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.7E-11 | 3 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.2E-8 | 4 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.71E-9 | 4 | 85 | No hit | No description |
Pfam | PF02362 | 3.0E-8 | 33 | 86 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MTTLFSKLLT KADIENVLSI PACTLGPLPF REGYSMNMHA HDGSGQQWIF SCNIQRNESV 60 GHFLSVGWIE FVRERNLQVD DSVTILEEVM KNQATCIKIE VKRKIRLFGK DIWADVI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1849s0030.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213926 | 3e-93 | AC213926.1 Populus trichocarpa clone POP063-D18, complete sequence. | |||
GenBank | AC214100 | 3e-93 | AC214100.1 Populus trichocarpa clone POP063-I02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002451.1 | 2e-68 | PREDICTED: uncharacterized protein LOC105109425 | ||||
TrEMBL | A0A3N7EL51 | 7e-67 | A0A3N7EL51_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s03590.1 | 1e-67 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13182 | 5 | 19 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1849s0030.1.p |