PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1847s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 1213aa    MW: 135039 Da    PI: 7.7671
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1847s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.63e-08424467346
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             +WT  Ed+ l+  v++ G  +W  Ia  +g++Rt+ qc sr+q+
  SapurV1A.1847s0020.1.p 424 PWTIKEDKNLLLIVQEKGVTNWFDIAVSLGTNRTPFQCLSRFQS 467
                             8*****************************************96 PP
2Myb_DNA-binding43.85.8e-14476521248
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               WT+eEd +l  av+ +G ++W ++a+t+  gR + qc +rw k l
  SapurV1A.1847s0020.1.p 476 REWTKEEDAQLRAAVETYGERDWQSVASTLE-GRAGTQCSNRWKKTL 521
                             68*****************************.***********9975 PP
3Myb_DNA-binding53.17.2e-17529573247
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             grWT +Ed++l+ avk++G++ W++Ia+ ++ gRt  qc++rw + 
  SapurV1A.1847s0020.1.p 529 GRWTLDEDKRLKVAVKLFGPKKWDKIAQFVP-GRTQVQCRERWVNC 573
                             8******************************.***********986 PP
4Myb_DNA-binding45.12.3e-14580622145
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             r+ WT+eEd++l+ a+++ G   W+++a++++  Rt++qc  rw 
  SapurV1A.1847s0020.1.p 580 RDEWTEEEDLRLKAAIEECGYC-WSKVAERLP-QRTDNQCLRRWK 622
                             789*****************99.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.121320416IPR017877Myb-like domain
SMARTSM007170.18321418IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-7324340IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-7389429IPR009057Homeodomain-like
SuperFamilySSF466895.99E-15397470IPR009057Homeodomain-like
SMARTSM007174.0E-6421471IPR001005SANT/Myb domain
PROSITE profilePS500908.258424469IPR017877Myb-like domain
CDDcd001672.89E-5424469No hitNo description
PfamPF002497.9E-8424467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-12430476IPR009057Homeodomain-like
SuperFamilySSF466892.14E-18454527IPR009057Homeodomain-like
PROSITE profilePS5129416.666470521IPR017930Myb domain
SMARTSM007171.2E-12474523IPR001005SANT/Myb domain
PfamPF002491.9E-11476520IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-18477527IPR009057Homeodomain-like
CDDcd001674.64E-11477521No hitNo description
PROSITE profilePS5129423.226522578IPR017930Myb domain
SMARTSM007175.3E-15527576IPR001005SANT/Myb domain
SuperFamilySSF466897.05E-27528621IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-21529580IPR009057Homeodomain-like
PfamPF002492.3E-15529573IPR001005SANT/Myb domain
CDDcd001672.82E-13530572No hitNo description
PROSITE profilePS5129419.478579629IPR017930Myb domain
SMARTSM007173.6E-12579627IPR001005SANT/Myb domain
PfamPF002499.8E-13580622IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-18581624IPR009057Homeodomain-like
CDDcd001673.23E-11582624No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1213 aa     Download sequence    Send to blast
MSRFRPPNDD DEEEEDDDDD FQNDMEALRQ ACIVTGTNLT NISPAAAVSD GSGEADGNFC  60
GGASVSDSES EDDFDLFRSV QNRFAKSAGS LEPLSLKPLC ALPPVSDDEE DDFETLCAVK  120
RRFAAYDNNN NQEKEKNEME KPEVGISDNS LVERNSACEP AAEQDDNATN LLGDNVKIGH  180
AASAEDKELD SGRLSTLELD YSSFPKSAQV FIDAIKKNRS CQKFIRNKLI QIEARIEENN  240
KLKDKVKILK DFQLSCRKIT GMALSLRKDP RIQLVSARKT SNSKHPKVNG KKVSPLHDGP  300
VENSHVANYR TALTNFPLAL NRKKWTETEK ENLGKGIRQQ YQEMVLQLSM DQFSCSEGSP  360
EDAKDLDSIL VSIRDLEITP EKIREFLPRV NWDQLASSYV AGRSGAECKA RWLNFEDLLI  420
NQCPWTIKED KNLLLIVQEK GVTNWFDIAV SLGTNRTPFQ CLSRFQSSLN ARILKREWTK  480
EEDAQLRAAV ETYGERDWQS VASTLEGRAG TQCSNRWKKT LHPAIRRVGR WTLDEDKRLK  540
VAVKLFGPKK WDKIAQFVPG RTQVQCRERW VNCLDPSMNR DEWTEEEDLR LKAAIEECGY  600
CWSKVAERLP QRTDNQCLRR WKALAPHEVP LLQAARRMQK AALISNFVDR ESERPALGPN  660
DFVPLAITGP VSEPEKMDQS RKRKRKSRRA ESQMEKVVAP GNALKKIRSN RCRKKVQFSS  720
KEVAEIPDGT QVGNLVGSCS IVSETAMEHC SENSSHAERG QDHPSSNSIL TPLMTTDFQG  780
VDSRQNQWHP DSHPEGHKPV DRDGNSKSLL LLPPENSEAG IINGVVFQTF PPNSTTSSKK  840
RRAQKQHSRK NIYAKSGEGS CSVLSETIDA SALVNDYMDS NLVTTNEEDN ILGQRDAPGK  900
KRVPKMHSES SEWTGSLHCL QPPLENSELR VTSSEIMNNS SSFGIPSNEK RKASKFPCRR  960
KIRIEEPSRK DQCFAAAPLQ LDTGKKSKAR GKSCSKVLKK KNEDDVLLSS FLTDKSKKKK  1020
LEAARNAAQA CSSSSMITRA EVLSRVDQPN DGNKLSSAVR NGEGQTCSNG RSSENGLSCD  1080
MHAHQSNHTQ TKPCELDVNN CGIFSPLDGV REPGSIDQEA VPEPGDISPA GSGSGVNTQS  1140
HERKGPQLHP IGVEQPRNDT DPDKLSCSVK NSIGSSSKPT IIGNDIEPGG RSSHSPSARG  1200
EAFKYYKRRS KR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-323946214155MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-323946214155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1680685RKRKRK
2680688RKRKRKSRR
39981019KKKNEDDVLLSSFLTDKSKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1847s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442776.10.0uncharacterized protein LOC7462515 isoform X1
TrEMBLA0A3N7HT610.0A0A3N7HT61_POPTR; Uncharacterized protein
STRINGPOPTR_0015s04260.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74413344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.10.0myb domain protein 4r1