PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1785s0020.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CO-like
Protein Properties Length: 528aa    MW: 57329.6 Da    PI: 5.546
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1785s0020.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.11.3e-061244436
                zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                              C+ ++e+ + l+C+ ++  lC  C ++ H+ 
  SapurV1A.1785s0020.2.p 12 VSCDFCSEQTAVLYCRADSAKLCLFCDQHVHSA 44
                            57***************************9954 PP
2zf-B_box21.45.1e-075486335
                zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                            +++C+++++++++  C +++  lC++C    H 
  SapurV1A.1785s0020.2.p 54 AQICDNCSSEPVSVRCATDNLVLCQECDWDAHG 86
                            689************************988883 PP
3CCT63.65.9e-22479522144
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                             R  a++RYkeK+k+R+++K+irYesRKa+A++R+RvKGrFvk +
  SapurV1A.1785s0020.2.p 479 RGDAMQRYKEKKKNRRYDKHIRYESRKARADTRKRVKGRFVKTT 522
                             6789*************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.054956IPR000315B-box-type zinc finger
SMARTSM003364.8E-13956IPR000315B-box-type zinc finger
CDDcd000211.03E-71256No hitNo description
PROSITE profilePS501199.4145299IPR000315B-box-type zinc finger
CDDcd000216.20E-65685No hitNo description
SMARTSM003361.75799IPR000315B-box-type zinc finger
PROSITE profilePS5101714.912479521IPR010402CCT domain
PfamPF062031.5E-16479521IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MVTQNSKTKE TVSCDFCSEQ TAVLYCRADS AKLCLFCDQH VHSANLLSRK HVRAQICDNC  60
SSEPVSVRCA TDNLVLCQEC DWDAHGSCSV SASHDRAIIE GFSGCTTALD LASIWGFDLE  120
GKKQEPLIEN WRSNSCGVVY DLVNEPWVYD KSSGNFSFQD LMVPNGNNNN GNRNVDNAVV  180
CGNVIKSPSC GKYKHVIYKQ LVELLKRDLM GGGDGGGGDG DGDGEGGDFG DGGEGCDFGG  240
GDDREGDNLV PETQSRSAWR EGVKGVGFGK GNGGRFGNDS VGGGGSNGNV RGEQVLPEQM  300
PFTSLLMLPT EVDVKSNGKE VGGDIMWDSK ANAHGTQIWD FNLGQLRSHD ESGQLEIEYG  360
AKDAGFAIKN FGELMKETCL TNTKMLGDVY QMNYSIAHDD VASFNNLNNN STSSQGPATS  420
ESNNFPVARV LSGTGLSKPK CSGSSKDVQF MEQSILLRGE GFKTEAATKV DMELLVRNRG  480
DAMQRYKEKK KNRRYDKHIR YESRKARADT RKRVKGRFVK TTEAPDC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1785s0020.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2977053e-53KC297705.1 Populus tomentosa COL gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452316.10.0zinc finger protein CONSTANS-LIKE 15 isoform X1
TrEMBLA0A2K2BT820.0A0A2K2BT82_POPTR; Uncharacterized protein
STRINGPOPTR_0001s13310.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.11e-63B-box type zinc finger protein with CCT domain