PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1744s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 477aa MW: 52560.2 Da PI: 9.4751 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 60 | 80 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H SapurV1A.1744s0010.1.p 60 CEICNKGFQRDQNLQLHRRGH 80 *******************88 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00022 | 134 | 156 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ SapurV1A.1744s0010.1.p 134 WKCEKCSKRYAVQSDWKAHSKTC 156 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-5 | 57 | 80 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.54E-6 | 57 | 80 | No hit | No description |
PROSITE profile | PS50157 | 10.824 | 58 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.6E-4 | 122 | 155 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.54E-6 | 129 | 154 | No hit | No description |
SMART | SM00355 | 130 | 134 | 154 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MLETIMAAEE EITSSVQNPV GGSNPPALKK KRNLPGTPDP EAEVVALSPK TLMATNRFLC 60 EICNKGFQRD QNLQLHRRGH NLPWKLKQRT NKEVKKRVYV CPENSCVHHH PSRALGDLTG 120 IKKHFCRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE YKCDCGTIFS RRDSFITHRA 180 FCDALAEETA RVNAVSSIND LSSGCINYHL TGNPFGPNMA QNFSSIFKPI SRNDNQTRQG 240 GVSLWMNHGL AQVSEAMGNN FQEVHQLRSV TISGAMFGDL PAVSSLQTPP SDNYMLNWPV 300 FGNKILSDGG ASQLASVPSL YSSQEHQSHQ TTSASMSATA LLQKAAQIGA TSSDPSFLGS 360 FAIKCSANKV QDASKFYGLY GSSPVSTNPA SDVESSGNDQ ISTLNHQFQM YSSKRQKIFQ 420 SGQDNPAGGQ TRDFLGVGVQ AICHPSSING WILTSWTGRS KFDSKMEQKK DKYFRF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-36 | 130 | 199 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 1e-36 | 130 | 199 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. | |||||
UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1744s0010.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. | |||||
UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011043608.1 | 0.0 | PREDICTED: zinc finger protein NUTCRACKER-like | ||||
Swissprot | Q9FFH3 | 1e-145 | IDD8_ARATH; Zinc finger protein NUTCRACKER | ||||
Swissprot | Q9ZWA6 | 1e-145 | IDD3_ARATH; Zinc finger protein MAGPIE | ||||
TrEMBL | U5FMI7 | 0.0 | U5FMI7_POPTR; C2H2 family protein | ||||
STRING | POPTR_0017s04840.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4626 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-144 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1744s0010.1.p |
Publications ? help Back to Top | |||
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