PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1723s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 275aa    MW: 31413.8 Da    PI: 7.1157
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1723s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS248.62.5e-763269163374
                    GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll................................... 214
                              rL++ Ae+l++pf+fn+ ++++le+l+le+Lrvk+gEala+++vlql++ll                                   
  SapurV1A.1723s0080.1.p   3 IRLTEEAEKLDIPFQFNP-IVSKLENLDLENLRVKTGEALAISSVLQLQTLLamddemhrrnspsgsknpnsnhfqrvqinqnrrtl 88 
                             69****************.7999**************************************************************** PP

                    GRAS 215 .........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                                                      + s     +  ++L++++slsPk++v++eqe++hn+ +++er++eal++y+alfd+le++++
  SapurV1A.1723s0080.1.p  89 gdwlerdvvnayssspdsalsplslAASP----KMGSFLNALRSLSPKLMVITEQESNHNGFTLMERVTEALNFYAALFDCLESTVS 171
                             ****************9997754444444....4566************************************************** PP

                    GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                             r s er+kvE++l+g+ei+n++aceg++r+erhe+lekW  rle aGF+ +pls++   qa++ l+ ++ dgy+++ee+g+lv++W+
  SapurV1A.1723s0080.1.p 172 RVSLERHKVEKMLFGEEIKNIIACEGTDRKERHEKLEKWILRLELAGFGIIPLSYHGRLQANRFLQSYGYDGYKIKEENGCLVICWQ 258
                             *************************************************************************************** PP

                    GRAS 364 drpLvsvSaWr 374
                             drpL+svSaW+
  SapurV1A.1723s0080.1.p 259 DRPLFSVSAWK 269
                             **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.4441249IPR005202Transcription factor GRAS
PfamPF035148.4E-743269IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAIRLTEEAE KLDIPFQFNP IVSKLENLDL ENLRVKTGEA LAISSVLQLQ TLLAMDDEMH  60
RRNSPSGSKN PNSNHFQRVQ INQNRRTLGD WLERDVVNAY SSSPDSALSP LSLAASPKMG  120
SFLNALRSLS PKLMVITEQE SNHNGFTLME RVTEALNFYA ALFDCLESTV SRVSLERHKV  180
EKMLFGEEIK NIIACEGTDR KERHEKLEKW ILRLELAGFG IIPLSYHGRL QANRFLQSYG  240
YDGYKIKEEN GCLVICWQDR PLFSVSAWKF RRYD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-264271177380Protein SCARECROW
5b3h_D4e-264271177380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1723s0080.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840730.0AC184073.2 Populus trichocarpa clone Pop1-50D1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299218.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-107SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2K2BR770.0A0A2K2BR77_POPTR; Uncharacterized protein
TrEMBLB9GM400.0B9GM40_POPTR; Uncharacterized protein
STRINGPOPTR_0001s06090.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-103scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]