PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1717s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 68aa MW: 7834.19 Da PI: 11.628 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.9 | 1.8e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienks r vtfskRrng++KKA ELSvLCd+++a++ifss+gklye+ss SapurV1A.1717s0010.1.p 9 KRIENKSSRLVTFSKRRNGLFKKARELSVLCDVQIALLIFSSRGKLYEFSS 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.2E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-28 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.529 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.6E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
MGRKKVEQKR IENKSSRLVT FSKRRNGLFK KARELSVLCD VQIALLIFSS RGKLYEFSSV 60 DRNLTRT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-18 | 1 | 61 | 1 | 61 | MEF2C |
5f28_B | 1e-18 | 1 | 61 | 1 | 61 | MEF2C |
5f28_C | 1e-18 | 1 | 61 | 1 | 61 | MEF2C |
5f28_D | 1e-18 | 1 | 61 | 1 | 61 | MEF2C |
6byy_A | 1e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_B | 1e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_C | 1e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_D | 1e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_A | 1e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_B | 1e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_C | 1e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_D | 1e-18 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:7632923, PubMed:25183521). Plays an important role in the determination of flower meristem identity. Involved in the specification of sepal identity. Contributes to the development of petals, stamens and carpels (PubMed:15530395). {ECO:0000269|PubMed:15530395, ECO:0000269|PubMed:25183521, ECO:0000269|PubMed:7632923}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1717s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011020776.1 | 2e-30 | PREDICTED: MADS-box protein FLOWERING LOCUS C-like isoform X1 | ||||
Refseq | XP_011020777.1 | 2e-30 | PREDICTED: MADS-box protein FLOWERING LOCUS C-like isoform X2 | ||||
Refseq | XP_011020778.1 | 1e-30 | PREDICTED: MADS-box protein FLOWERING LOCUS C-like isoform X3 | ||||
Refseq | XP_011020779.1 | 1e-30 | PREDICTED: MADS-box protein FLOWERING LOCUS C-like isoform X4 | ||||
Refseq | XP_011020780.1 | 1e-30 | PREDICTED: MADS-box protein FLOWERING LOCUS C-like isoform X5 | ||||
Swissprot | P29383 | 3e-26 | AGL3_ARATH; Agamous-like MADS-box protein AGL3 | ||||
TrEMBL | A0A3N7EWE5 | 4e-30 | A0A3N7EWE5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s16840.1 | 2e-30 | (Populus trichocarpa) | ||||
STRING | POPTR_0003s16870.1 | 2e-30 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 9e-29 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1717s0010.1.p |
Publications ? help Back to Top | |||
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