PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1711s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HB-other | ||||||||
Protein Properties | Length: 151aa MW: 17352.6 Da PI: 9.9837 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.5 | 1.1e-08 | 46 | 85 | 16 | 55 |
HHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 16 eelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 e+ Fe+++ + + LA++l+L r+V+ WFq rRa+e SapurV1A.1711s0040.1.p 46 ENIFEEDNRIPNSIQLSLAEQLNLVPRKVQDWFQKRRARE 85 67899966666666778*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.8E-4 | 39 | 92 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 10.673 | 46 | 88 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.19E-5 | 46 | 89 | No hit | No description |
Pfam | PF00046 | 3.6E-6 | 46 | 85 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.92E-7 | 46 | 85 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.1E-8 | 48 | 90 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MDFERVRGGG SAGKKRDLEL ESGQASSSSN DGAENPLVQK KPRFSENIFE EDNRIPNSIQ 60 LSLAEQLNLV PRKVQDWFQK RRAREMSKQM DYEILKEDNE LLKKANERLR RQIEFLIPLV 120 KSPPRKIPPS RERIQRAFSP CSDESSTPIQ * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1711s0040.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 8e-13 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1711s0040.1.p |