PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1710s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family DBB
Protein Properties Length: 195aa    MW: 22522.2 Da    PI: 8.5013
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1710s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41.1e-06433534
                zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                             C+ +e+  ++ fC  ++  lC  C ++ H
  SapurV1A.1710s0060.1.p  4 LCDACESAAAIVFCAADEAALCLACDEKVH 33
                            7**************************998 PP
2zf-B_box29.91.2e-095291237
                zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                            + ++C+ +e+ ++ ++Ce++++ lC  C ++ H g    H
  SapurV1A.1710s0060.1.p 52 DVPRCDICENAPAFFYCETDGSSLCLPCDMTVHVGgkrtH 91
                            5799****************************96555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.4E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.068147IPR000315B-box-type zinc finger
CDDcd000211.28E-5345No hitNo description
PfamPF006433.8E-5342IPR000315B-box-type zinc finger
SuperFamilySSF578454.81E-54888No hitNo description
PROSITE profilePS501199.34351103IPR000315B-box-type zinc finger
SMARTSM003361.0E-115196IPR000315B-box-type zinc finger
PfamPF006431.9E-75291IPR000315B-box-type zinc finger
CDDcd000213.83E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCLACDE KVHMCNKLAS RHVRVGLANP SDVPRCDICE  60
NAPAFFYCET DGSSLCLPCD MTVHVGGKRT HGRYLLMRQR VEVCYWFLRK NPTIFFLLCE  120
IPLKFEPFEF LNSFQGIDLS MRTHPRNLWI QGRQGRNRIS HQRQQQERSD RIARFLQFQG  180
QSIILMEMAR WRKR*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1710s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1465971e-108EF146597.1 Populus trichocarpa clone WS01210_C06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310844.11e-68B-box zinc finger protein 18
SwissprotC0SVM51e-59BBX19_ARATH; B-box zinc finger protein 19
TrEMBLB9HFI73e-67B9HFI7_POPTR; Uncharacterized protein
STRINGPOPTR_0007s13830.15e-68(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2844723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.18e-51DBB family protein