PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1699s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 242aa    MW: 25448.2 Da    PI: 8.3431
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1699s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.2e-056183123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C++C++ F ++  L  H++ H
  SapurV1A.1699s0060.1.p 61 YECQYCSREFANSQALGGHQNAH 83
                            99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.6E-55887IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.36E-65888No hitNo description
PROSITE profilePS5015712.1756188IPR007087Zinc finger, C2H2
PfamPF139121.2E-56185IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010090Biological Processtrichome morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAELDYETKH SSPTTRLKLF GFNVSEDEEL VIATTDSRKS SSCNTPDSSS FATATGDSRK  60
YECQYCSREF ANSQALGGHQ NAHKKERQQL KRAQMQATRN AAAAAVSFGR NPMITAFAPP  120
PHLLAQAAGQ VVVPASSQSW VYLPRPAPPF HVSHGSVFPG GVGGRGVLSL PYGGGVGDFG  180
LASSASSPQQ QVLSRARSSR VIDDHNGPTS LTRFSKSDSG PSLDDTLGLD LHLSLAPAGS  240
C*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Acts upstream of GIS, GIS2, ZFP8, and the trichome initiation factors GL1 and GL3. Binds the promoter region of GIS and GIS2, which may be direct targets of GIS3. {ECO:0000269|PubMed:25640859}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1699s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314851.11e-126zinc finger protein GIS3
SwissprotQ9C9H18e-54GIS3_ARATH; Zinc finger protein GIS3
TrEMBLB9HWF81e-125B9HWF8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s13230.11e-125(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31981316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.19e-12C2H2 family protein
Publications ? help Back to Top
  1. Sun L, et al.
    GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis.
    New Phytol., 2015. 206(1): p. 220-30
    [PMID:25640859]