PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1592s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GeBP | ||||||||
Protein Properties | Length: 381aa MW: 42641.8 Da PI: 7.6189 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 118.1 | 4.9e-37 | 160 | 255 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 lfqrlw+eeDei+lLqG+idf a++g +ps+d+++f++f+k+s++f+vs +ql +Ki rL+kKf+++vk k+g++++fsk+hdqk SapurV1A.1592s0010.1.p 160 LFQRLWTEEDEISLLQGIIDFIAEKGYDPSKDTNEFFDFIKQSLHFDVSMTQLKDKISRLRKKFENHVKG-KKGENKVFSKPHDQKG 245 79******************************************************************99.99************** PP DUF573 89 felskkiWgs 98 f+lsk iWgs SapurV1A.1592s0010.1.p 246 FDLSKYIWGS 255 ********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.4E-32 | 161 | 254 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MAPKRAPPVR DPPSASSSEE EETSSGEEEA SDDERSQPSP PQPQTKTIRT QNSTPKKPEP 60 TTHQSESELE SESGSESGSE SEPGQSVKPL TSKPMEQIPP KEAAAAVVKK SRSKPAVAAT 120 PEKSTAVKRG NGADRDPKDL KRAKNKQSDP EKSEDSKKQL FQRLWTEEDE ISLLQGIIDF 180 IAEKGYDPSK DTNEFFDFIK QSLHFDVSMT QLKDKISRLR KKFENHVKGK KGENKVFSKP 240 HDQKGFDLSK YIWGSEGCIK ANGKKNTNLN DNKKGNSKKL EALKADLGID VGEEERMEVE 300 MERDSSVKKV LKFDRKASVG TMEDYVVRCG LDFAHGVKKE EMEEKWRKLR IAELELFLKR 360 NELLGEQGKI MLSAFKADKD * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1592s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF145118 | 0.0 | EF145118.1 Populus trichocarpa clone WS01120_J07 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313912.1 | 0.0 | GLABROUS1 enhancer-binding protein-like | ||||
TrEMBL | B9HMZ5 | 0.0 | B9HMZ5_POPTR; GeBP family protein | ||||
STRING | POPTR_0009s09150.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25210.1 | 7e-34 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1592s0010.1.p |