PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1588s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YA
Protein Properties Length: 338aa    MW: 36431.6 Da    PI: 9.2466
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1588s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.58.2e-32183239158
               CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                             d p++VNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh hA++R RgsgGrF
  SapurV1A.1588s0020.1.p 183 DGPIFVNAKQYHGILRRRQSRAKLEAQNKL-VKNRKPYLHESRHIHAVNRVRGSGGRF 239
                             57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-35181242IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.983182242IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-23185207IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.3E-27185239IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860187207IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.3E-23216239IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MALRIQNLLK KNFDEPHLTV SCPSWWNSNE QHFSPSLSKN ISFKADSLPQ PYHEAKQLGL  60
HLPDQESSST LSIGQSHNEM SVVGGTNSQG QCISSESDES CGKGVGGKMR PVLLLSTPDS  120
VSNHSQADCS YSMARTSYPC ADPYFGGLFN PYGPHAFIQP QMGSHMVGMT AGRVPLPVDL  180
ADDGPIFVNA KQYHGILRRR QSRAKLEAQN KLVKNRKPYL HESRHIHAVN RVRGSGGRFL  240
STKKRSNPTS SPSQCNVSDT VGLHPKNGAS ELESSQSRTG QSGASNTTCS DITSVSNSDV  300
NFRQPDHRFS GIAAHLGGGV MINGGLMSNG HHASVVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-21185248467NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1588s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2130152e-97AC213015.1 Populus trichocarpa clone POP034-G19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308270.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_024459824.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_024459825.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_024459826.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_024459827.10.0nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_024459828.10.0nuclear transcription factor Y subunit A-4 isoform X1
TrEMBLB9HDV60.0B9HDV6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s14740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-49nuclear factor Y, subunit A3