PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1535s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | AP2 | ||||||||
Protein Properties | Length: 363aa MW: 40969.2 Da PI: 7.3423 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.4 | 1.1e-15 | 40 | 99 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n k+ ++++lg ++ +e Aa a++ a++k++g SapurV1A.1535s0040.1.p 40 SIYRGVTRHRWTGRYEAHLWDkNSWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 99 57*******************888866656446*************************98 PP | |||||||
2 | AP2 | 50.7 | 4.4e-16 | 142 | 193 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g SapurV1A.1535s0040.1.p 142 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 193 89****99**********99966...3.6*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.36E-11 | 40 | 109 | No hit | No description |
SuperFamily | SSF54171 | 3.66E-17 | 40 | 109 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.7E-12 | 40 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-16 | 41 | 107 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-25 | 41 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.31 | 41 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 42 | 53 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.04E-23 | 142 | 203 | No hit | No description |
Pfam | PF00847 | 7.8E-12 | 142 | 193 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-17 | 142 | 203 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 143 | 202 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-24 | 143 | 207 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.268 | 143 | 201 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 183 | 203 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MGKSSKQTLE DSANTSSNPT NKAKRTRKSV PRDSPPRRSS IYRGVTRHRW TGRYEAHLWD 60 KNSWNESQNK KGRQVYLGAY DDEEAAAHAY DLAALKYWGQ DTILNFPWST YEEELKEMEG 120 QSKEEYIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYATQEEA 180 ATAYDMAAIE YRGINAVTNF DLSRYIKLLR PNINQNNLQL NPNGDANRFQ DLDRKTGLDL 240 IMSHHPSSSV NETEVTDPTR PAGGAASSAL GLLLQSSKFK EILERTSAAN PPLTPPESDR 300 DPPRRSFPDD IQTFFDCQDS SIYTDVDDII FGELNSFASS IFHYELDGQE MVSGTNKSIL 360 TI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1535s0040.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024448435.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Refseq | XP_024452992.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 1e-121 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A2K2B973 | 0.0 | A0A2K2B973_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s18350.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 7e-86 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1535s0040.1.p |
Publications ? help Back to Top | |||
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