PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1532s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 255aa MW: 27985 Da PI: 7.7011 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00045 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C C++ F+++ L H++ H SapurV1A.1532s0070.1.p 55 YDCRFCDRKFPSSQALGGHQNFH 77 88******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.19E-6 | 54 | 83 | No hit | No description |
PROSITE profile | PS50157 | 11.323 | 55 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 57 | 77 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MERGSSSSTA DVEDKKMKGK VLDQEPAMDP ESDPLLVLRL FTGEVGDDDE ETIEYDCRFC 60 DRKFPSSQAL GGHQNFHKKE RAVMKRQQDI EANPFGILYP FHATASAMAA FRSHNHDPFN 120 NKNSLNNNMG IKSQSMIQKP SHYRYPNSLL AGSRSFIGPA WWSRQSDLSS QPSYMRGSAW 180 LARARNSYPT LASLLGRRPQ QVGGSNQGGS PSLSNLSSLS SQRIGSVESS GAGASSWNEQ 240 SHDSPAELDL TLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1532s0070.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28553 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 1e-13 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1532s0070.1.p |