PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1529s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ARF | ||||||||
Protein Properties | Length: 677aa MW: 75430 Da PI: 6.6161 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.6 | 2.8e-24 | 130 | 230 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+kvlt sd++++g +++ +k+a+e+ +++++ +++l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF SapurV1A.1529s0070.1.p 130 FCKVLTASDTSTHGGFSVLRKHASEClppldMIQPTPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLLAGDSFVF 216 99****************************988888888************************************************ PP EE-SSSEE..EEEEE- CS B3 83 kldgrsefelvvkvfr 98 + +++el+v+v+r SapurV1A.1529s0070.1.p 217 V--RGENGELRVGVRR 230 *..449999*****98 PP | |||||||
2 | Auxin_resp | 107.1 | 1.9e-35 | 256 | 335 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+s F v+Y+Pr+ s+F+++++k+++a+++k++vGmRfkm+fe+eds+err+sGt+vgv+d++ +W++SkWrsLk SapurV1A.1529s0070.1.p 256 ASHAISTQSLFVVYYKPRT--SQFIISLNKYLEAVNNKFAVGMRFKMRFEGEDSPERRFSGTIVGVEDFSC-HWNDSKWRSLK 335 789***************6..9**********************************************665.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.93E-39 | 121 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-39 | 122 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.12E-20 | 128 | 230 | No hit | No description |
Pfam | PF02362 | 3.6E-22 | 130 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.4E-23 | 130 | 232 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.111 | 130 | 232 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.4E-33 | 256 | 335 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.1E-5 | 539 | 600 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.77E-13 | 556 | 640 | No hit | No description |
PROSITE profile | PS51745 | 25.838 | 564 | 645 | IPR000270 | PB1 domain |
Pfam | PF02309 | 3.9E-7 | 610 | 653 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 677 aa Download sequence Send to blast |
MMGMNREGGG SLSQGNSEGC GEDDLYMELW KACAGPLVDV PKRGERVFYF PQGHMEQLEA 60 STNQELNQRI PLFNLPSKIL CRVIHVQLLA EQETDEVYAQ ITLLPETDQI EPTSSDSCPS 120 EPPRPTVHSF CKVLTASDTS THGGFSVLRK HASECLPPLD MIQPTPTQEL AAKDLHGYEW 180 RFKHIFRGQP RRHLLTTGWS TFVTSKRLLA GDSFVFVRGE NGELRVGVRR VARQQSSMPS 240 SMISSQSMHL GVLATASHAI STQSLFVVYY KPRTSQFIIS LNKYLEAVNN KFAVGMRFKM 300 RFEGEDSPER RFSGTIVGVE DFSCHWNDSK WRSLKVQWDE PASFPRPDRV SPWEIEPCVA 360 SVPTNLSQTV QPKNKRPRPP IEIPAFDLSS TASTPWNSGL AQSRDLAQLS VTGEGKRNEN 420 HVMRHQKQTD INGHSNSMTR TQGEGGWLSY VNVSQHLFQD SMEDSKSVSP WPVFLGYSTP 480 LSSKKSEVPA SYRLFGFDLV NQSTSSTPIE KVPAQPISVS SGVTDGRALA APSAFESDRK 540 SEVFKEKKPE LLETQSKQSS TSTRSRTKVQ LQGIAVGRAV DLTLIKGYGQ LIDELENLFD 600 IKGQLNPRDK WEIVYTDDEG DMMLVGDDPW PEFCNMVRRI FICSSQDVKK MSPGSKHPML 660 PPEGEGTVTS SDSAEN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-177 | 13 | 357 | 7 | 354 | Auxin response factor 1 |
4ldw_A | 1e-177 | 13 | 357 | 7 | 354 | Auxin response factor 1 |
4ldw_B | 1e-177 | 13 | 357 | 7 | 354 | Auxin response factor 1 |
4ldx_A | 1e-177 | 13 | 357 | 7 | 354 | Auxin response factor 1 |
4ldx_B | 1e-177 | 13 | 357 | 7 | 354 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 374 | 378 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1529s0070.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024453551.1 | 0.0 | auxin response factor 9 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A2K2B707 | 0.0 | A0A2K2B707_POPTR; Auxin response factor | ||||
STRING | XP_002518850.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1511 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1529s0070.1.p |