PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1488s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ARR-B | ||||||||
Protein Properties | Length: 549aa MW: 60564 Da PI: 6.2008 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 21 | 7.3e-07 | 165 | 192 | 23 | 50 |
G2-like 23 GsekAtPktilelmkvkgLtlehvkSHL 50 G +A+Pk+il+lm+ + Lt+e+vk L SapurV1A.1488s0020.1.p 165 GLYEAVPKKILDLMNAEKLTRENVKYRL 192 7789********************9655 PP | |||||||
2 | Response_reg | 58.7 | 3.2e-20 | 13 | 98 | 25 | 109 |
EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 v+++++++ al++l+e++ +D+++ D+ mp+mdG++ll+ e++lp+i+++a+g+++++ + + Ga +l Kp+ +eel + SapurV1A.1488s0020.1.p 13 AVTTTSQATTALRMLRENKnkFDMVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDPKLVMKGITHGACYYLLKPVRIEELKT 98 68999**********888778*******************87754.558***********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00448 | 4.1E-12 | 1 | 100 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 33.066 | 1 | 104 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 5.3E-30 | 4 | 126 | No hit | No description |
SuperFamily | SSF52172 | 9.96E-25 | 13 | 112 | IPR011006 | CheY-like superfamily |
Pfam | PF00072 | 3.7E-17 | 13 | 99 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.44E-20 | 14 | 104 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-5 | 165 | 196 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MLDLLNKWVV DSAVTTTSQA TTALRMLREN KNKFDMVISD VHMPDMDGFK LLELVGLEMD 60 LPVIMLSANG DPKLVMKGIT HGACYYLLKP VRIEELKTIW QHLIKRKKSD NKDRNSLDNR 120 DKPDEGPDQK LNKKRKDQNG DEDEDPDEDE DEHENEDPTT QKKPGLYEAV PKKILDLMNA 180 EKLTRENVKY RLYLKRISTV ANQQANRVAA LGSSDASYLQ INSMSRLGLH NLAGSAQFHS 240 TPFRSLPSSG MLDRLNSPPV LGIHGLPSPG VIQLGHVQTA PHYANGPSHF QTAGHPGNNG 300 NLLQGMPMPL ELDQIQSNKD HGRCNDNWSN AVQSNGVQSN SLTLNDCFKR SILHPSAIRE 360 SMSTMALQSR NNPCDVSSIS TLPIHLQDSK ADLPCQVGVA TVSSNAGQLI NNGPLGWDDH 420 RQDDPYHSNG LSNSINSAIP INGNGNPNGC NLDANSLFFQ RTTRFSSTGL SNFVDTSLMK 480 HNEVECSAME TLVRSRDGYL PSQEKPQDGS VLNNFGSLED LVSVMVNQAS LHVPVHSCRD 540 DFVFPVLY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1488s0020.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN908144 | 0.0 | FN908144.1 Populus x canadensis mRNA for putative B-type response regulator 22 (rr22 gene), cultivar Dorskamp. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024459850.1 | 0.0 | two-component response regulator ARR12 isoform X1 | ||||
Swissprot | A2X1N2 | 5e-89 | ORR24_ORYSI; Two-component response regulator ORR24 | ||||
Swissprot | Q6H805 | 6e-89 | ORR24_ORYSJ; Two-component response regulator ORR24 | ||||
TrEMBL | D7GN49 | 0.0 | D7GN49_POPCA; Two-component response regulator | ||||
STRING | POPTR_0006s27800.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 9e-79 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1488s0020.1.p |
Publications ? help Back to Top | |||
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