PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1483s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 414aa MW: 45836.9 Da PI: 8.8413 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.9e-32 | 222 | 275 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ SapurV1A.1483s0070.1.p 222 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 275 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.33E-15 | 219 | 275 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 220 | 275 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-23 | 222 | 275 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.4E-7 | 223 | 274 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MRSDSQAYIE LSLAHPATGL DEESRRNLSS ARVEELPHNP YRQKSHHHQH LHRSNGTTHH 60 LNHINHGVSL LEVSDSFRPI KGIPVYHNRS FPFMPLEHSS RENKDSKRGF YQMPYPSSSL 120 CSPSVNPHSS SSTSSPYSIG GGGLDPMSML NSSGPNQALP GPYSRLAPAT RFNGLSMDAF 180 KSHHLHHHHN QYGVGSTEGS PHGLIRSRFL PKLPTKRSMR APRMRWTSTL HARFVHAVEL 240 LGGHERATPK SVLELMDVKD LTLAHVKSHL QMYRTVKTTD KPAASSDGSG EEDMSPIGSF 300 STANERGGLL RVVQPDGPTV QLDVDYPPST TSAATTLWSN SSSGREAWSQ ANSNDMDGHR 360 QETFQPQQRS GQQMEECNST RLKSYLGSSN MDCKNPSLEF TLGRPDWQGK EHC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 8e-16 | 223 | 277 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-16 | 223 | 277 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-16 | 223 | 277 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-16 | 223 | 277 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1483s0070.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214214 | 0.0 | AC214214.1 Populus trichocarpa clone POP028-A01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024444406.1 | 0.0 | transcription repressor KAN1-like | ||||
TrEMBL | A0A2K1X7N1 | 0.0 | A0A2K1X7N1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s02220.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1756 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 4e-83 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1483s0070.1.p |