PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.1460s0110.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 314aa MW: 33955.8 Da PI: 9.7117 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131 | 4.2e-41 | 24 | 100 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe+hsk+++v+++g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+ SapurV1A.1460s0110.5.p 24 CLVDGCTSDLSKCRDYHRRHKVCEFHSKSSQVFIKGQEQRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKPQP 100 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.0E-33 | 20 | 85 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.906 | 21 | 98 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.26E-38 | 22 | 103 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.8E-30 | 24 | 97 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 314 aa Download sequence Send to blast |
MESSSSGSSK RARTPNNATL VPSCLVDGCT SDLSKCRDYH RRHKVCEFHS KSSQVFIKGQ 60 EQRFCQQCSR FHSLGEFDEG KRSCRKRLDG HNRRRRKPQP DSLSMNSTRI FSNQGTRYLQ 120 FGSSQIFSTS AMSTAWTGAG KAESDPMLYA SQSSMNFGGR KSLFPGSLSP NYKGGKQFPF 180 LQGTSSTLPG DSVCLNGNST LGNIGNSQKM FSDGLNRVID SSRALSLLSS PPSETREIGL 240 SHIVQPNLNP PAQSLIPSLN YNDALGMESE PVGPALISDG SSNSNPHGQH LFLIGSDGLS 300 ASGSHQTLSF SWK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 9e-31 | 24 | 97 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 80 | 97 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.1460s0110.5.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002299319.2 | 0.0 | squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_024454730.1 | 0.0 | squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_024454737.1 | 0.0 | squamosa promoter-binding-like protein 16 | ||||
Swissprot | Q6YZE8 | 4e-59 | SPL16_ORYSJ; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A385JHL3 | 0.0 | A0A385JHL3_POPTO; Squamosa promoter-binding protein-like | ||||
TrEMBL | B9GMM7 | 0.0 | B9GMM7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s13630.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50670.1 | 9e-50 | SBP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.1460s0110.5.p |