PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1460s0110.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SBP | ||||||||
Protein Properties | Length: 377aa MW: 40917.5 Da PI: 9.3875 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.5 | 5.8e-41 | 87 | 163 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe+hsk+++v+++g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+ SapurV1A.1460s0110.3.p 87 CLVDGCTSDLSKCRDYHRRHKVCEFHSKSSQVFIKGQEQRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKPQP 163 **************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.0E-33 | 83 | 148 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.906 | 84 | 161 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-38 | 85 | 166 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.2E-30 | 87 | 160 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MGYNFKTPWE LAELEKQSTP YFTQITVSSS LRVPHATGYC SVDLNLGNSG NFKDKYKDSG 60 GSLMESSSSG SSKRARTPNN ATLVPSCLVD GCTSDLSKCR DYHRRHKVCE FHSKSSQVFI 120 KGQEQRFCQQ CSRFHSLGEF DEGKRSCRKR LDGHNRRRRK PQPDSLSMNS TRIFSNQGTR 180 YLQFGSSQIF STSAMSTAWT GAGKAESDPM LYASQSSMNF GGRKSLFPGS LSPNYKGGKQ 240 FPFLQGTSST LPGDSVCLNG NSTLGNIGNS QKMFSDGLNR VIDSSRALSL LSSPPSETRE 300 IGLSHIVQPN LNPPAQSLIP SLNYNDALGM ESEPVGPALI SDGSSNSNPH GQHLFLIGSD 360 GLSASGSHQT LSFSWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-30 | 87 | 160 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 160 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1460s0110.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002299319.2 | 0.0 | squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_024454730.1 | 0.0 | squamosa promoter-binding-like protein 16 | ||||
Refseq | XP_024454737.1 | 0.0 | squamosa promoter-binding-like protein 16 | ||||
Swissprot | Q6YZE8 | 2e-58 | SPL16_ORYSJ; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A385JHL3 | 0.0 | A0A385JHL3_POPTO; Squamosa promoter-binding protein-like | ||||
TrEMBL | B9GMM7 | 0.0 | B9GMM7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s13630.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 4e-49 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1460s0110.3.p |