PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1460s0110.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 377aa    MW: 40917.5 Da    PI: 9.3875
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1460s0110.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.55.8e-4187163278
                             -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                     SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                             C v+gC++dls++++yhrrhkvCe+hsk+++v+++g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+
  SapurV1A.1460s0110.2.p  87 CLVDGCTSDLSKCRDYHRRHKVCEFHSKSSQVFIKGQEQRFCQQCSRFHSLGEFDEGKRSCRKRLDGHNRRRRKPQP 163
                             **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.0E-3383148IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.90684161IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-3885166IPR004333Transcription factor, SBP-box
PfamPF031105.2E-3087160IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGYNFKTPWE LAELEKQSTP YFTQITVSSS LRVPHATGYC SVDLNLGNSG NFKDKYKDSG  60
GSLMESSSSG SSKRARTPNN ATLVPSCLVD GCTSDLSKCR DYHRRHKVCE FHSKSSQVFI  120
KGQEQRFCQQ CSRFHSLGEF DEGKRSCRKR LDGHNRRRRK PQPDSLSMNS TRIFSNQGTR  180
YLQFGSSQIF STSAMSTAWT GAGKAESDPM LYASQSSMNF GGRKSLFPGS LSPNYKGGKQ  240
FPFLQGTSST LPGDSVCLNG NSTLGNIGNS QKMFSDGLNR VIDSSRALSL LSSPPSETRE  300
IGLSHIVQPN LNPPAQSLIP SLNYNDALGM ESEPVGPALI SDGSSNSNPH GQHLFLIGSD  360
GLSASGSHQT LSFSWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-30871601184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143160KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1460s0110.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299319.20.0squamosa promoter-binding-like protein 16
RefseqXP_024454730.10.0squamosa promoter-binding-like protein 16
RefseqXP_024454737.10.0squamosa promoter-binding-like protein 16
SwissprotQ6YZE82e-58SPL16_ORYSJ; Squamosa promoter-binding-like protein 16
TrEMBLA0A385JHL30.0A0A385JHL3_POPTO; Squamosa promoter-binding protein-like
TrEMBLB9GMM70.0B9GMM7_POPTR; Uncharacterized protein
STRINGPOPTR_0001s13630.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-49SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang SS,Wang CS,Tseng TH,Hou YL,Chen KY
    High-resolution genetic mapping and candidate gene identification of the SLP1 locus that controls glume development in rice.
    Theor. Appl. Genet., 2011. 122(8): p. 1489-96
    [PMID:21327937]
  3. Wang S, et al.
    Control of grain size, shape and quality by OsSPL16 in rice.
    Nat. Genet., 2012. 44(8): p. 950-4
    [PMID:22729225]
  4. Wang S, et al.
    The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality.
    Nat. Genet., 2015. 47(8): p. 949-54
    [PMID:26147620]
  5. Wang Y, et al.
    A comprehensive meta-analysis of plant morphology, yield, stay-green, and virus disease resistance QTL in maize (Zea mays L.).
    Planta, 2016. 243(2): p. 459-71
    [PMID:26474992]
  6. Lee CM, et al.
    Influence of Multi-Gene Allele Combinations on Grain Size of Rice and Development of a Regression Equation Model to Predict Grain Parameters.
    Rice (N Y), 2015. 8(1): p. 33
    [PMID:26519289]
  7. Bessho-Uehara K, et al.
    Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(32): p. 8969-74
    [PMID:27466405]