PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1460s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | CAMTA | ||||||||
Protein Properties | Length: 964aa MW: 107706 Da PI: 5.4992 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 174.9 | 1.1e-54 | 13 | 127 | 3 | 116 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs 88 +e ++rwlk+ e++ iLen++k+++t+e++++p+sgsl+L+n++++++frkDG++w+kkkdg++v E+he+LKvg+ve+l+cyYah+ SapurV1A.1460s0040.1.p 13 EEaQTRWLKPAEVVFILENHDKYQFTEESPQKPTSGSLFLFNKRVLKFFRKDGHNWRKKKDGRSVGEAHERLKVGNVEALNCYYAHG 99 55599********************************************************************************** PP CG-1 89 eenptfqrrcywlLeeelekivlvhyle 116 e+n++fqrr+yw+L++++e+ivlvhy++ SapurV1A.1460s0040.1.p 100 EQNQNFQRRSYWMLDRAFEHIVLVHYRD 127 **************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 77.99 | 8 | 134 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.9E-72 | 11 | 129 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.5E-47 | 14 | 127 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 2.6E-10 | 397 | 487 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 2.24E-18 | 402 | 486 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 2.4E-9 | 402 | 485 | IPR002909 | IPT domain |
CDD | cd00102 | 1.27E-6 | 402 | 486 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 5.6E-15 | 598 | 692 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.733 | 600 | 692 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 7.0E-16 | 603 | 694 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.15E-13 | 620 | 692 | No hit | No description |
Pfam | PF12796 | 5.4E-7 | 621 | 693 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.22 | 633 | 665 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0032 | 633 | 662 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2300 | 672 | 701 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 19 | 750 | 772 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.62 | 751 | 780 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.06E-5 | 803 | 857 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.13 | 805 | 827 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.419 | 806 | 833 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0028 | 808 | 826 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0074 | 828 | 850 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.712 | 829 | 853 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0014 | 831 | 849 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 964 aa Download sequence Send to blast |
MLPSGYDIND LFEEAQTRWL KPAEVVFILE NHDKYQFTEE SPQKPTSGSL FLFNKRVLKF 60 FRKDGHNWRK KKDGRSVGEA HERLKVGNVE ALNCYYAHGE QNQNFQRRSY WMLDRAFEHI 120 VLVHYRDITE GKPSSGSAAQ LSPILSCSPD NNTSQTRGST SAVSGVYEPY QSFSSPASVD 180 VSSGLGIKDN GVDRTAEFTS SDNNEVTQFL RRLEEQLSLN ADSANEIGPF GGEEGAINDT 240 KFLEYINNIS KEDHSKNLLH GSQYIADYQS YGGLAEKQLE RYNLAPFRDA DGSKEPLPWN 300 EVIESYKTSS CTEYQPKSSL STEPAQEQEN FYWINFNEPD VRNSSLLLPE EAENFELPAY 360 SSVIETHENN SNYYAMLYDQ GHLGMAIEAD SNLTVAQQQK FTIYEISPEW GYATEATKVI 420 IVGSFLCDPS ESSWMCMFGD TEVPLQIIQE GVIRCDSPPQ QPGKVTLCIT SGNRESCSEI 480 RDFEYRAKNS SSAHCNLCQT EDTKSPEELL LLVRFVQMLL SDFSLQGGDR VEMGIHLLRK 540 LKADDDTWGY IIEALLVGSG TSSMTVDWLL QQLLNDKLQQ WLSSKSQEGH DQPGCSFSKK 600 EQGIIHMVAG LGFEWALSPI LSHGVSINFR DINGWTALHW AARFGREKMV ASLLASGASA 660 GAVTDPSPQD PIGKTPASIA ATSGHMGLAG YLSEMALTSH LSSLRLEESE LSKGSAELQA 720 ERTLESVSKE SFTDNEDQVS LKYTLAAARN AAQAAARIQS AFRAHSFRKR QLREATSLDE 780 YGISGGDIQG LSSVSKLAFH GNSHVINSAA LCIQKKYRGW KGRRNFLALR QKVVMIQAHV 840 RGYQIRKYYE IICWAVGVLD KAVLRWRRKG IGLRGFKNPM ESIDESEDED FLKIFRKQKV 900 DGAIDEAVSR VLSMVKSPNA RLQYHRTLEQ YRKAKAGLDG MSGAAASTFQ VDGTEMENDL 960 YHF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1460s0040.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006368871.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X1 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | U5GPG6 | 0.0 | U5GPG6_POPTR; CAMTA family protein | ||||
STRING | POPTR_0001s13700.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4548 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1460s0040.1.p |
Publications ? help Back to Top | |||
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