PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1446s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 118aa    MW: 13353.3 Da    PI: 6.3413
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1446s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.51.5e-1032863083
                            ..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3 30 keesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83
                            +  s+ +   d +g++W + +++ r+ s +++l+ GW eFv++ +L++ D+v++ 
  SapurV1A.1446s0090.1.p 32 EGHSMNMHAHDGNGQEWIFSCNIqRNESVGHFLSVGWIEFVHERNLQVDDSVTIL 86
                            5567889999***********775777777**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-11388IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-8485IPR015300DNA-binding pseudobarrel domain
CDDcd100172.30E-9485No hitNo description
PfamPF023621.8E-83286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MTTLFSKNLT KADIENVLSI PACTLGPLPF REGHSMNMHA HDGNGQEWIF SCNIQRNESV  60
GHFLSVGWIE FVHERNLQVD DSVTILEEVM KNQATCIKIE VKRKIRLFGK DIWADVI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1446s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139267e-91AC213926.1 Populus trichocarpa clone POP063-D18, complete sequence.
GenBankAC2141007e-91AC214100.1 Populus trichocarpa clone POP063-I02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002451.11e-69PREDICTED: uncharacterized protein LOC105109425
TrEMBLA0A3N7EL512e-66A0A3N7EL51_POPTR; Uncharacterized protein
STRINGPOPTR_0015s03590.13e-67(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13182519