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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | SapurV1A.1446s0060.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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| Family | B3 | ||||||||
| Protein Properties | Length: 109aa MW: 12684.6 Da PI: 10.3776 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 37.4 | 4.5e-12 | 6 | 90 | 2 | 89 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
k+l + d ++r+vl+ + ++ + ++e l+++de+g++W++++++ ++s+r l++ W Fv++++Lk+gD++ + ld++++
SapurV1A.1446s0060.1.p 6 TKKLNNIDI--ERRIVLSENLIKGFPRDHE--AYLKFKDEDGKVWTFRCRVpPGGSSRPALSGDWFVFVRSKQLKVGDVIEIALDREKD 90
555533333..3457888888877755543..47***************9988888889*********************999987654 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50863 | 9.22 | 1 | 103 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.1E-14 | 2 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 5.70E-12 | 3 | 89 | No hit | No description |
| SuperFamily | SSF101936 | 9.55E-13 | 4 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
| SMART | SM01019 | 8.6E-4 | 5 | 103 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.8E-9 | 16 | 90 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 109 aa Download sequence Send to blast |
MEKIFTKKLN NIDIERRIVL SENLIKGFPR DHEAYLKFKD EDGKVWTFRC RVPPGGSSRP 60 ALSGDWFVFV RSKQLKVGDV IEIALDREKD RSGVDQFTIR FKKQLDRN* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | SapurV1A.1446s0060.1.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011002452.1 | 7e-57 | PREDICTED: double-stranded RNA-binding protein 3-like | ||||
| TrEMBL | A0A2K2AZU8 | 9e-55 | A0A2K2AZU8_POPTR; Uncharacterized protein | ||||
| STRING | POPTR_0003s00440.1 | 1e-55 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF13561 | 5 | 27 |
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | SapurV1A.1446s0060.1.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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