PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.1446s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 120aa MW: 13776.8 Da PI: 10.8875 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.3 | 5.5e-13 | 7 | 95 | 4 | 88 |
E-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS..-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg..rsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFk 83 +l+ dv r+++p + ++e+ gg+ +l ++d+sg +s+++ + r k+++ v+++GW++Fv+a+gLk+g +vF SapurV1A.1446s0040.1.p 7 TLSETDVE--VRFSVPSRWFRENlysrfGGNFV--LDLPVKDRSGevQSFRFSV--RTKGKHlkPVISRGWRKFVRAKGLKAGNEIVFV 89 55344443..468************99977744..479*******555555555..55555555************************9 PP E-SS.S CS B3 84 ldgr.s 88 ++++ + SapurV1A.1446s0040.1.p 90 RENDpE 95 776543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.003 | 4 | 108 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-15 | 5 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-13 | 5 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.70E-15 | 6 | 106 | No hit | No description |
Pfam | PF02362 | 5.9E-10 | 15 | 93 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MANLRKTLSE TDVEVRFSVP SRWFRENLYS RFGGNFVLDL PVKDRSGEVQ SFRFSVRTKG 60 KHLKPVISRG WRKFVRAKGL KAGNEIVFVR ENDPEIGTEY TVDVIKEIRL FGTDIQGRV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.1446s0040.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002456.1 | 3e-64 | PREDICTED: uncharacterized protein LOC105109432 | ||||
TrEMBL | B9GZ50 | 2e-63 | B9GZ50_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s00470.1 | 3e-64 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28501 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 1e-07 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.1446s0040.1.p |